G2308873 (arl4a)


Basic Information

Item Value
gene id G2308873
gene name arl4a
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 23222533 ~ 23224830 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2641096
TTATTCAAGGTGAACACATTTATACAAACAAATACATAAATATGAGCACCTCTCCCCCTCACACAGAGTAAACCAGGGGGACAACTGACATTCCAATGTGATAACAGCATAACAATATTAGTTAACGCTTCCTTCGAAGCAATATCAACATGTCACTTCTTTAAGTATCATAACAAACCTCATACAAAAAGCTGATGCAAGTTCTAAGGTCAGAAAACAGACCAATAAAGTGCCTTTATTTGACTGTCTAATCGACATGGAAGTCCATGGGTGCGTTCCAGATACCCTCATTCTACTTAGGTCCTTGCACCCAGTCTTAGGCTGGTACTAGGACTGGATCTGACAGATGCCTGACACTTGGAGTACAGGGTCCAGAtcagacagctagccaagccaggAAAGAATATTCAGGGTATGCTGAGCCAACCAGCATGTCAAATCAACAGAATTACACAAGACAACCACACTGCCTGACAGCTTTTTTTTACCCCTACCTCCCACCTAACCCAAATGACAGTCACATTAAATAGCCCAACTGCTGTAGATTATCATTTATCGCTGATGAAACAATAAGGTTGTTACATATCGTTTAAAAACATCCATCTCTGTATTCTCTTCTCAGTGAATCATCAAGCTTATGCTAAACTCGTCTATCTAGACCCTCTCGACTTCCATTGAGCAACATGGAGACAGAATACTGACTGATTGTAAGACTAACTTTGAGGTCACACTAACAAGTGACTGACTGCAACTTGATTGTCCTTTGTGTTTTCCACATGTAATCTCATTGTCAACACAGGCTTTGGTAAACCGACCATTTCAATGTGTTTTCATGCTTCAAACTGATTGAAAAGCAGGCTACATACATTTGTAACACTTAAGAGTGTAGACAGAACACAATACATTTGACTTCtgacacttcaacagtgttttgaTTGTTTTGTCTCTGAGAACCCCTGTGTGCCTCATGGTATAGAATAACACTTCCTTTAAACATACATTAGTGTCCACTGTCCTGTGATGCTGTGCCAGCCAGGATAGTTGCCATCCAAAGTCCATGAAAATCTATTCCATCAGTTCCAGTGAGGACAGCGTGACAACAGCCCTGAACAGACTTAGTCCCATTCCATATGACTAATACAACTCAGCCAccagacaggcaggcaagcagcGGACCCATCACTGAGGGCTCCACGAGACACTGAGCATTGtgggtactgtagtacatcatgctaCAGTCAACACCACGTGTCCTGCTCATGGTTACCACCACAACAGGTGAGTCCCCATCCACCACCATTGTTAGCTTAAGTCCTTGTGTAGCTCCAACAAGATGGCGGTTGTGTGCGCGACCATTCAGATCATCTCTTCTTCTGTTGAGCTTTCTGTGTCTTCTTCCGTTTGTTGATCATGGCGTGGAGCTTCTCCAGACCTTCCTGTAGCCCCTCCCCTATGATAGCGCAGGCGGGCTGCAGGTGCCAGGGTGTTCCATTACCCAGCTCCCCTAGCGCCAGAGAGCGCTCCATCTCGTGAAGCGGCAGAGAGTTCCTCAGGTCCTGCTTGTTGGCCACCACTAGAACCGGCACCCCCTGGTTCTCCGCTAACCTCGTGATCTTATGGAGCTCCGTCTTGGCTTCCTCTAGGCGCTCGATGTCGACGGAATCCACCACGAACACAATGCCGTCAGCACACCGCGTGTACGAGCGCCACAGGGGGCGGAGCTTCTCCTGACCACCCACGTCCCAGAAGTGGAACGCCGCTTTCCGCCAGGACTTTCCGCCCGCGCTCAGGGACACTTTGATCTTCTCCGTGTTGAATCCCTTAGTGGGGACCGTGTTCACAAACTCATTGAAGCGAAGGCGGTAGAGGACAGTGGTCTTCCCGGCGCAGTCCAGACCCAGGATGACAATATGGAGGgcctggaaggaaggaaggctgGGGAAGATCTGGTCTGATAATCCATTCCCCATCTTGTTATTCACGTTGAGGGAGACAGGGGAGTGTCGAGCTGGTGCTGCGTCAACAAATAATCACAAGGCTTCTCATTCCCTTCAGAGGGGGCTGTGC

Function

symbol description
arl4a Enables GTP binding activity. Predicted to be involved in intracellular protein transport and vesicle-mediated transport. Predicted to act upstream of or within brown fat cell differentiation. Located in cytosol; nuclear lumen; and plasma membrane.

NR:

description
ADP-ribosylation factor-like protein 4A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2641096 True 2067 lncRNA 0.48 2 23222533 23224830

Neighbor

gene id symbol gene type direction distance location
LOC118946519 NA coding upstream 7915 23199004 ~ 23214618 (+)
LOC110488125 LOC106570318 coding upstream 102490 23107982 ~ 23120043 (+)
LOC110488124 LOC106570319 coding upstream 146493 23072517 ~ 23076040 (+)
LOC110489407 LOC106588710 coding upstream 152788 23062097 ~ 23069768 (+)
LOC110488122 LOC100136469 coding upstream 205517 23012552 ~ 23017016 (+)
LOC110489408 LOC106588717 coding downstream 75740 23300570 ~ 23469848 (+)
LOC110488130 LOC106570312 coding downstream 250944 23475774 ~ 23540812 (+)
LOC110488131 LOC106570311 coding downstream 533463 23758293 ~ 23883531 (+)
LOC118946518 NA coding downstream 589766 23814596 ~ 23818032 (+)
LOC110488133 NA coding downstream 754536 23979350 ~ 23981983 (+)
G2308592 NA non-coding upstream 117631 23104697 ~ 23104902 (+)
G2308574 NA non-coding upstream 139282 23082939 ~ 23083251 (+)
G2308882 LOC106570315 non-coding downstream 11117 23235947 ~ 23236457 (+)
G2308936 NA non-coding downstream 112666 23337496 ~ 23337695 (+)
G2308991 NA non-coding downstream 221321 23446151 ~ 23450031 (+)
G2309092 NA non-coding downstream 430082 23654912 ~ 23658368 (+)
G2308224 NA other upstream 617812 22604320 ~ 22604721 (+)
c32h5orf49 cssa14h5orf49 other upstream 806241 22405971 ~ 22416346 (+)
G2306825 NA other upstream 1635099 21587088 ~ 21587434 (+)
G2306688 NA other upstream 1898637 21320623 ~ 21323896 (+)
LOC110488072 LOC106570395 other upstream 1910655 21307432 ~ 21311878 (+)
LOC110488142 LOC106570295 other downstream 926857 24151527 ~ 24157473 (+)
G2311528 NA other downstream 2510364 25735194 ~ 25736847 (+)
G2311978 NA other downstream 2694322 25919152 ~ 25919800 (+)
G2312300 NA other downstream 3100322 26325152 ~ 26325383 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000063_06428760_06430410 ARL4D coding CI01000063 null 6428444 ~ 6430783 (+)