G2309329


Basic Information

Item Value
gene id G2309329
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 24160495 ~ 24175394 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2641644
TCAAGGGTATGGGGCACTTTTTATATCAGTAGTGGTTAGGATGAAATACAGTAGACAGACACATAGCATTATGTACATAACTTTAGACATCTAATGCTGTAGTTCCATCAGTCTAGACTCTAGATGGATCGTAGTTGAGAAAACAAAGTGCAATCAAATGCACCATGGTTAGCATCCAACTTCCAGTGTGTCTTTTGGTTTCACTATTTTCCTTAAGTAATGTAACCCATTATACGAGTCTGTCTCAAGTATGTTTCGTCTTCAATTGAATCATGTTGTTCCCAGCTTGACATTCAATCTGTAACACATTCTATTGTTATCTCAACGACACACTCACGCAAGAACCCTCacataaatacaaaaacacacatccacgcacacacactttattATGGTTTATAGACCACTATTACACCATGTCATGGTCTTTGCTCTGATTAGGATAAtcaggggggggggtgaaaacaTGTTGTTATGATTATAAAATTATAAAATACAACTTTTTTAATGGTGAGTGAGTGTTGAGCATTATCCAAAGAAAGATAACCTTGGGGATTGATCAAGGCATCAAAGCATTACAAAGTTCCATCATAATTCTGTTCtgacatttaaaatgtttaaGAGACATGAGTTGAATTGGGATACTTCTCTTTATCATGTTGGGTAAAGAACAGGAGAAtgtctataccatctataccagtggaggctcctcagaggcgGAAGGGGAgaaccatcctcagtgaatttcattttttttttaaaagtaaaaCTTTTTAAAGTAATTATTTTTTAGATGAAACAATACTATaataaatataatcacgtcaccaaataattgattaaaacactattttgcaaagaaggtctacagtagactcagcagcactctgtagggtagcaccaagGTGTAGcaggaggacagctagcttcagtcctcctctgggtacatcgaCTTCAAAagaaaacctaggaggctcatggttctcaaccccttccatagacttacacagtaattataacctctggaggatgtcctcctacctatcagagctcttgcagcaatggggatccataatcaatacaaatacaaaatgacatgttgtccacccaatcaaaggatcagataattaaactagtactgaaagcataagctatagctagctagcactgcagtgcatgtGGTGcatagttgactcaaagagaaagacaatagttgaacagtttaacaaattaatttcttccatttgcaggagaagcaagagagaagtgtatatagagagagattgtCGTTTTTTTTAGCTAgtaaatgcagctagctagtttagcctactgaaacactcCGCCCAAACAGcaggatgctatgttagcttgctggctatgactatctaacacaacactggaactcttccaagtcaaggtaagcttgtGGTTTTATTAAATTATTGCCCCCGGGGACTGatggtgtaactgcttactgactatacactgtaaagttactgcatgattgtagtgggtttactaacgcattagttctattagccatgttgactaggacgttactttagctaatatggtgacaaagaTGCAGGCTGTGTGTGGTGGTTTGGCTTGGAACGTTTTTTTTGCctgatcacatacagctgatgtgttgtgcattgaagtccacaagcgactGGAAGAGGTAAGAGGAGGAGCGCGCAGAAGGAATAAAACGCAAGAAGAAATACGTGGCTGTGTGTTTACGCACGATCAGCGGTGTATTCATTCCGtggattctgttgaaaaaaaagtttcttaaatggaagcaaacggaacaaaacggggattAACATACtttaatttgtccaatagaaattcTCGTTTGCATccgtctctcgacctgtgtgcacctacgttataAACGTTCATTAAtaagctaggttgtagcaacctcatgatgggtataaggAAAATGTGAGTATCACGTAGTAGTAGCTATACCTATCGccgttacattgaactgggtaaatggaatatgaatgacagtcgtcCAATATGCTGAAATAGAAATGGACATAGTGCACCTTTGCCAATCAGATAGGAAACTATAACACACCACACTTttgggtgggggccacaaaatctgaactcatcacgaggggccgcagtggctcgCAGGTCTGAGTACCCACATCCATAACCACACATGCAGCAAACttgcgagcaaaacattttagtggcccttTTGACAGAGGAGAGAATTTTTTttagttaatttcctgcaattc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2641644 True 2267 lncRNA 0.39 2 24160495 24175394

Neighbor

gene id symbol gene type direction distance location
LOC110488142 LOC106570295 coding upstream 3022 24151527 ~ 24157473 (+)
sdhaf3 LOC106570289 coding upstream 76109 24065828 ~ 24084386 (+)
LOC110488137 LOC106606710 coding upstream 101178 24044440 ~ 24059317 (+)
LOC110488133 NA coding upstream 178512 23979350 ~ 23981983 (+)
LOC110488131 LOC106570311 coding upstream 276964 23758293 ~ 23883531 (+)
LOC110488145 LOC106570298 coding downstream 28376 24203770 ~ 24215296 (+)
ngly1 ngly1 coding downstream 234467 24409861 ~ 24420001 (+)
LOC110488151 LOC106570304 coding downstream 244780 24420174 ~ 24467243 (+)
LOC110488157 LOC106588669 coding downstream 621924 24797318 ~ 24915300 (+)
LOC110488160 LOC106588667 coding downstream 768033 24943427 ~ 24951969 (+)
G2309346 NA non-coding upstream 53383 24106224 ~ 24107112 (+)
G2309342 NA non-coding upstream 60659 24099564 ~ 24099836 (+)
G2309324 NA non-coding upstream 72380 24087692 ~ 24088115 (+)
G2309307 NA non-coding upstream 87490 24072597 ~ 24073005 (+)
G2309266 NA non-coding upstream 100375 24029073 ~ 24060120 (+)
G2309397 NA non-coding downstream 18135 24193529 ~ 24193971 (+)
G2309398 NA non-coding downstream 21594 24196988 ~ 24209748 (+)
G2309330 NA non-coding downstream 42492 24217886 ~ 24218828 (+)
G2309333 NA non-coding downstream 43564 24218958 ~ 24219844 (+)
G2309405 NA non-coding downstream 45610 24221004 ~ 24221240 (+)
G2308224 NA other upstream 1555774 22604320 ~ 22604721 (+)
c32h5orf49 cssa14h5orf49 other upstream 1744203 22405971 ~ 22416346 (+)
G2306825 NA other upstream 2573061 21587088 ~ 21587434 (+)
G2311528 NA other downstream 1559800 25735194 ~ 25736847 (+)
G2311978 NA other downstream 1743758 25919152 ~ 25919800 (+)
G2312300 NA other downstream 2149758 26325152 ~ 26325383 (+)
G2312752 NA other downstream 2557910 26733304 ~ 26733645 (+)
LOC110488193 LOC106570239 other downstream 2641290 26816398 ~ 26820899 (+)

Expression


Co-expression Network