G2309511


Basic Information

Item Value
gene id G2309511
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 24467466 ~ 24469607 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2641848
ggcatttcatggtaaagttaAACAGTATATGAACATATAAAGCATTGTTAATATACAAACAGACAATATTGAAATCGAAAACAAGATAGAAGCTCACTGTAAAGCTCCCTATGAGGACGTCCTGCTTTCTCTTCCCACCAGGCCAGCAGGAGGTTCTGGGTAAATGTATAATCACCATGACAACTCCCTGCTGCCCTGCCCACCCTCCAGAAAGACAAAGTTAAGAAAACTCAACCATAATTTGATCATGTCTCTTCATAATAACACTAACTATACAACACTGCATATGATGACAATGAGGTTTTCTGATACCGATGGGGTGAAAAAGGCAATGATATACATTATTTGTAAATGTTAAACTTTTGAACATTTTTGAACAGGCATAACAACAAAGTTGCTTTCGAAGGTACATTTTTTTTTGAGGTTCACAGTCATGCTTCTACTGGATAGTTAGATAATGTAGGGCACAGCGGTGGAACATTCAAATAGAAATACGTTGCATAGAACAGACACCACTGACTTGTAGAGCATGGACTCGTTGTGCCAGATCTATTCAGTgtatttctatctgcaatgttcaGTACGTTGCCCCCTTCCGGTACATGTATTGATCTTATTCCGTTTATTGTCTTACATTTCTGTCAGTTGATTGATTTAGTGACAGCTGCTTGGCATTCCAACTGAAGAGGGGAAATCAGCTCTGTTGTTTGATCAGCGATGACATCGGGGTAACTAGAGTTTCGAAATTATGGAAACTTTTCACAAATTTAAGAATTCCACATTGGAAATTCCTTtagcttattccctcctgattacAAAAATCCTCTGAccatgatccccccccccccccccccccccgcccaccaAAAAAAGGAATTTGGGGAAGgtttctggaattttgcaactCTATTGTGAACCCATGCTCAGGTACTGAGACCATTTGGTCCTAAATGATGTGGGGGTGAGCAGCTGCTACCCAAGAGGGGCTGGCTATGAGATGAAGCTCTGAGAGGTCAGATAGCCTAAAGCTGCCATTAGTTGAGACATaaagcacaccacacacaccatctaATACATGAACAAGTCTGCAGTGAGATAGTAGTAGTAAATATTAACAGTTACATCGGTACAACATTCAACAGAAACCAATGTAAATTCGGCATTGTGGAATGGATTGAGTTCCCTGCCGTGTCACCTGGTGCCTGTAGGTGGCGCTCAGGTCACTAGGGAGATGGATGTAGACATTCTTCAGCTGTGAAATAAGTTTTCCAACTTCAAAGACACTCAGGGTAAATGTCAGACGTCTTTCCGTGATTCATCACATCCTCGATTCCTCACCTCAACAACACACATTGTAGAAGGTCTGAGGTTCTGCACCCTTTCCTCCAATgcgttttgagaaggaggtgcgGCATCAAGGGAGAGGAATGTAGGGCAGACTATTGAGATTCATCCACACTGCTCTTGTGATGAGCCACCAGGATTGTTTTaccctacatccctctctcccttaggAGGAAAGAGAGCATTTAATTTTTTGTCATACATACAATGAGATGCAATGAATTTGACAAAACGCTGCTTTAAAGTAAGTATTCCTTTAACACTGCATATCATTCCTATGTAAAACCTGGACGGCATATTCACATTCAAACATGGAACAACGGAGACAGTTTTGTTTTCCCCTTAAGATATGTATGTATTACATGTGGTGTTgatatggaggagaggagatggttgTGTGTGAGATGGTTCTGAAAGGTTCtagccagggttggggtcaattccatatCAATTCAGTCTATTCAGGAAGCAAACTGAAATAATCCAAcaggaattgaccccaaccttcTAGCTGACTGACTACAGTGGTCATCTGTTCCCTTGTGGTAAAATGTTTGCCTCTATTCAGAATAAAAAAAACTCTTTATACCTCTGAGATGAGTGACTCAATAATCACCCATAACAGTTTATGCCAAATTATTATTACCCTTAAGAATGATAAAGAAAACTGTTTATTACTATCACCCTTAACATTATGTCGGCTACATATAATTCACCTTCAAGTTTTCTATAAGTACTATGAGAAGTATTGCCTTCGTGCTAGTTGAGTCAACATCTGAATAAATGATATTGTCTATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2641848 True 2142 lncRNA 0.41 1 24467466 24469607

Neighbor

gene id symbol gene type direction distance location
LOC110488151 LOC106570304 coding upstream 223 24420174 ~ 24467243 (+)
ngly1 ngly1 coding upstream 47465 24409861 ~ 24420001 (+)
LOC110488145 LOC106570298 coding upstream 252170 24203770 ~ 24215296 (+)
LOC110488142 LOC106570295 coding upstream 309993 24151527 ~ 24157473 (+)
sdhaf3 LOC106570289 coding upstream 383080 24065828 ~ 24084386 (+)
LOC110488157 LOC106588669 coding downstream 327711 24797318 ~ 24915300 (+)
LOC110488160 LOC106588667 coding downstream 473820 24943427 ~ 24951969 (+)
LOC110488162 LOC106570281 coding downstream 580688 25050295 ~ 25061664 (+)
mtf mtf coding downstream 597390 25066997 ~ 25083433 (+)
LOC110489411 LOC106570275 coding downstream 617760 25087367 ~ 25110258 (+)
G2309519 NA non-coding upstream 42448 24424409 ~ 24425018 (+)
G2309508 NA non-coding upstream 58941 24408274 ~ 24408525 (+)
G2309504 NA non-coding upstream 64297 24402906 ~ 24403169 (+)
G2309502 NA non-coding upstream 70103 24397004 ~ 24397363 (+)
G2309500 NA non-coding upstream 72263 24394901 ~ 24395203 (+)
G2309538 NA non-coding downstream 9238 24478845 ~ 24479072 (+)
G2309539 NA non-coding downstream 9731 24479338 ~ 24485024 (+)
G2309540 NA non-coding downstream 10300 24479907 ~ 24485959 (+)
G2309544 NA non-coding downstream 26037 24495644 ~ 24496050 (+)
G2309546 NA non-coding downstream 27989 24497596 ~ 24497969 (+)
LOC110488133 NA other upstream 486687 23979350 ~ 23981983 (+)
G2308224 NA other upstream 1862745 22604320 ~ 22604721 (+)
c32h5orf49 cssa14h5orf49 other upstream 2051174 22405971 ~ 22416346 (+)
G2306825 NA other upstream 2880032 21587088 ~ 21587434 (+)
G2311528 NA other downstream 1265587 25735194 ~ 25736847 (+)
G2311978 NA other downstream 1449545 25919152 ~ 25919800 (+)
G2312300 NA other downstream 1855545 26325152 ~ 26325383 (+)
G2312752 NA other downstream 2263697 26733304 ~ 26733645 (+)
LOC110488193 LOC106570239 other downstream 2347077 26816398 ~ 26820899 (+)

Expression


Co-expression Network