G2312104 (LOC100846954)



Basic Information


Item Value
gene id G2312104
gene name LOC100846954
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 26003804 ~ 26004319 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU2644708
GTAGTTGggcaccaggtttgcacacatctcaggagggattttgtcacACTCCTCTTTGCAgttcttctccaagtcattaaggttttgaggctgatgtttggcaactcaaaccttgagctccctccacagattttctatgggattaaggtctggagactggctaagccactccaggaccttaatgtgcttcttcttgagccactccttggttgccttggccatgtgttttgggtcattgtcatgctggaatacccatccatgacccattttcaatgccctggctgaggaaAGGAGGTTCTCACcaaagatttgacggtacatgtcCCCGTCCACCGTTCCTTTGAtgtggtgaagttgtcctgtccccttagcagaaaaacacccccaaagcataatgtttccacctccatgtttgacggtggggatggtgtcttggggtcataggcagcattcctcctactccaaacacggcgagttgagttgatgccaaagagctccattttggtctcatctgac

Function


NR:

description
transposase

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU2644708 True 516 lncRNA 0.49 1 26003804 26004319

Neighbor


gene id symbol gene type direction distance location
LOC110488175 LOC106570260 coding downstream 807 25995578 ~ 26002997 (-)
LOC110488174 LOC106588632 coding downstream 474653 25528117 ~ 25529151 (-)
LOC118946560 NA coding downstream 545877 25457791 ~ 25457927 (-)
LOC118946558 NA coding downstream 546208 25457520 ~ 25457596 (-)
LOC118946559 NA coding downstream 546703 25457021 ~ 25457101 (-)
LOC110488176 LOC106570259 coding upstream 15001 26019320 ~ 26043739 (-)
LOC110488182 LOC106570253 coding upstream 294394 26298713 ~ 26322682 (-)
zdhhc18b LOC106570247 coding upstream 571128 26575447 ~ 26583341 (-)
LOC110488185 LOC106570245 coding upstream 589779 26594098 ~ 26661878 (-)
ntl ntl coding upstream 679660 26683979 ~ 26687789 (-)
G2312103 NA non-coding downstream 198 26003274 ~ 26003606 (-)
G2312094 NA non-coding downstream 11357 25992227 ~ 25992447 (-)
G2312081 NA non-coding downstream 29419 25974071 ~ 25974385 (-)
G2312073 NA non-coding downstream 43753 25959728 ~ 25960051 (-)
G2311993 NA non-coding downstream 67221 25936281 ~ 25936583 (-)
G2312132 NA non-coding upstream 13658 26017977 ~ 26018742 (-)
G2312152 NA non-coding upstream 43131 26047450 ~ 26047723 (-)
G2312160 NA non-coding upstream 45877 26050196 ~ 26059490 (-)
G2312165 NA non-coding upstream 65108 26069427 ~ 26069813 (-)
G2312079 LOC106582599 other downstream 34443 25968983 ~ 25969361 (-)
G2311141 NA other downstream 840674 25162692 ~ 25163130 (-)
umad1 LOC106588684 other downstream 2024551 23962314 ~ 23979279 (-)
G2310415 NA other downstream 2185798 23816297 ~ 23818006 (-)
G2310381 LOC106570311 other downstream 2242453 23760515 ~ 23761351 (-)
G2313729 NA other upstream 519925 26524244 ~ 26524609 (-)
LOC110488229 LOC106570201 other upstream 3289937 29283078 ~ 29318812 (-)
G2316235 NA other upstream 3493611 29497930 ~ 29500245 (-)
G2316696 NA other upstream 4029979 30034298 ~ 30039597 (-)
G2318269 NA other upstream 5131188 31135507 ~ 31135959 (-)

Expression



Co-expression Network