XLOC_004194 (plekha3)


Basic Information

Item Value
gene id XLOC_004194
gene name plekha3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 29756860 ~ 29768054 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008026
CTGTAAACAGTGATCTCATCCCTAatctctctccgtctgtctgcGTCTGCCATCGGCTGCATCTGCCAGCATGCGCAGATCTTCGTCGCCACAGAAATGACCGTCAAAACTTATATCGTTTTCTCGTTACATTAAGACCCGTTCTTTTGACACAATGCCGAGTAGCTGGGGGATCTTTGAGTTAGCCTGCAGGATGCTAGCATGCTAATTGGCCAGTAAAGGGGGCAAACAAGCAGCAGGCTGGTGCGAGCGCCGTTAAAGCTGCTTTAAGGTGTTTTCACCTGGTTTTCTGCTTGGAGAATAATGGAAGGAGTCCTTTATAAATGGACAAACTATATGACAGGATGGCAGCCAAGGTGGTTTGTGCTGGACAATGGCATTATTTCCTATTATGATTCACAAGATGACGTGTGCAAAGGAAGCAAAGGCAGTATTAAGATGTCAGTGTGTGAAATTAAAGTTCACCCGACTGACAACACGCGTCTGGAGCTCATCATACCAGGAGAGCAGCATTTTTATGTGAAGGCTGTAAATGCAGCCGAGAGGCAGAAGTGGCTGGTGGCTCTGGGAAGCTCCAAAGCCGGACTCATTGACACTCGAACCAAAAAAGAAAGGGAGTTAACAGAAACCACAGAATCACTGAAAACCAAGATGTCGGAGCTGCGTCTGTACTGTGACTTACTAATGCAGCAAGTACACACTATTCAGGAGTCAGTCGAACAGCACGAAGAGCCGGCGGTGGCCAACACTGAGACAAGGAACGAGGCGTCCTCATTACTAAGTGCCACCTGTGAAACCTTCATCAAAACACTGGAAGAATGTATGAAGATCGCCAACTCTAAGTTCAAGACTGACATGTTGCAGTCCAGTCCATCTGATTCCATAATGTCTCCTGTGTCCCCATCTCCTGTCCAGATGTCTCGGATGAAGCGTTCGATCAGCCATCCTGGCACCTACAATTATGAAAGGTCGAGTTTGCCAAAAGACTGTGTGGCGTTCCAGAAATCCAGTCAGAGGAGGACGAGGACATGCTCCGATACTGAAGCTCACAGCGACAGAGGACCTGACGACATAGAGCGCttgatgtttcacagagcaaaCATCAACGGTGACTCCACTCCGAGTATCCCAGAAGAGGTTGGAACAAGCACAAAGTTCCTGTCGGAAACTGACACTCCGGAATCTGACCTTTCCCTCTGAACCACGCAGGACGACTTACGAGATGGGGAATAAAAGCGAAACACGTACTGCTGTGCAGTCACAGATTGCAGCATTATAGAGACAGATTTTACATAGTATTtcctgatgatgatgaagatgaagaagaatTTGGTGGCACTTTATAAAAACAGTAGTCGGATTTGAATGTTTATACTCTTCCAGGTATTTTAAGATATTCGTTTGCCTTGATGCTAagatgtttttcctttttttgtgatAAATAATTATTGCCGTATCCCTTCAGTGAAGAGTTTGTACTGGATTTCTAATGTGTCGTGCAGATGCCTTTGTTAAATGGGAACCTTGCTGAGAGGTTTTTGTTACTGTGCCAAGGGGATGTGCTTACATGCTGACATTAACgtacatgttttttctttttttttttattcactcagCATGCAATGTTGTTCATTAGTTCATGATGcagaatacatttatttatttttgtatatcacTAGAGTTTTCTCCTTCCCCCTAAAATTGTTTTTTTGCCTTAATTAATTCTTCGCATGGAGGAATTTGATCTATTAATTATTGTAATGTTtggaaaaaagttattaaaaaagctATAGCGGGATTATGTCCAAAGTGGGTTTtgtaagtatgatttttaaaatttatatatatattatgctctGTAATCAGGAGCTTTTCAAAGGCAAAGAGGGAATTCATAATACAAATGTAGTTTGTgattatttgctttattattcACTCGGCATACAGTGTCTGTGCAATCTTTATTTATTCAcaccaaaaaaagttttttttgccTTAATTAATTGCATAGAGGAATTTCTGGAAGCCAGTTTCTgccatgaaaaaataaataaaaaggaaattgcaaca
>TCONS_00008027
ATCTGATTCCATAATGTCTCCTGTGTCCCCATCTCCTGTCCAGATGTCTCGGATGAAGCGTTCGATCAGCCATCCTGGCACCTACAATTATGAAAGGTCGAGTTTGCCAAAAGACTGTGTGGCGTTCCAGAAATCCAGTCAGAGGAGGACGAGGACATGCTCCGATACTGAAGCTCACAGCGACAGAGGACCTGACGACATAGAGCGTGAGTCACACACACCTCCACCTACATGCAGATCAATGAATGAGTCACAAACACTTGGGTTGTGCCAAACTTTGCTGAATCgtggatgaatgaatattgtaGTGTCGTATTAGCTCTGCAATATGAAAAATGTTGACTAAATTGTggcaaaaaataagtaaataaaataaaacactacgCTGAACGTGACATCTTGGTGTTTTCAGCATCATGTCAGCAGCTGCTCTCACACTCACTTCCAAAAGAAGCATTTTACTGTATACACAAAAACGTAATTGTCCTCATAATAACCTGTCACaatgaaagtttaatttaaagGTACTGTTTGCtcaaa

Function

symbol description
plekha3 Predicted to enable ceramide 1-phosphate binding activity and ceramide 1-phosphate transfer activity. Predicted to be involved in ceramide transport and intermembrane lipid transfer. Predicted to be active in cytosol and membrane. Orthologous to human PLEKHA3 (pleckstrin homology domain containing A3).

GO:

id name namespace
GO:0120009 intermembrane lipid transfer biological_process
GO:0035627 ceramide transport biological_process
GO:0005829 cytosol cellular_component
GO:0016020 membrane cellular_component
GO:1902387 ceramide 1-phosphate binding molecular_function
GO:1902388 ceramide 1-phosphate transfer activity molecular_function
GO:0008289 lipid binding molecular_function

KEGG:

id description
ko04131 Membrane trafficking
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-040426-1252 Predicted to enable ceramide 1-phosphate binding activity and ceramide 1-phosphate transfer activity. Predicted to be involved in ceramide transport and intermembrane lipid transfer. Predicted to be active in cytosol and membrane. Orthologous to human PLEKHA3 (pleckstrin homology domain containing A3).

Ensembl:

ensembl_id ENSDARG00000056601

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008026 False 2070 mRNA 0.42 8 29756860 29768054
TCONS_00008027 True 540 lncRNA 0.42 3 29760108 29762011

Neighbor

gene id symbol gene type direction distance location
XLOC_004193 NA coding downstream 19613 29734578 ~ 29737247 (-)
XLOC_004192 nr0b1 coding downstream 71007 29682909 ~ 29685853 (-)
XLOC_004191 chd5 coding downstream 98464 29574743 ~ 29658396 (-)
XLOC_004189 arhgef10la coding downstream 193423 29331142 ~ 29563437 (-)
XLOC_004190 NA coding downstream 211871 29537982 ~ 29544989 (-)
XLOC_004195 cybb coding upstream 27101 29795155 ~ 29833698 (-)
XLOC_004196 vegfd coding upstream 121774 29889828 ~ 29916607 (-)
XLOC_004197 pir coding upstream 149559 29917613 ~ 29946927 (-)
XLOC_004198 CU652893.1 coding upstream 193060 29961114 ~ 29961901 (-)
XLOC_004199 ace2 coding upstream 213624 29981678 ~ 29996357 (-)
XLOC_004063 CR854846.1 misc downstream 13629182 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 17065169 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 17135093 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 17165564 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 17243598 12512966 ~ 12513262 (-)
XLOC_004188 NA non-coding downstream 436941 29099927 ~ 29319919 (-)
XLOC_004187 NA non-coding downstream 668234 29085366 ~ 29088626 (-)
XLOC_004183 BX649345.1 non-coding downstream 1231364 28522364 ~ 28525496 (-)
XLOC_004200 CR318645.1 non-coding upstream 333088 30101142 ~ 30101257 (-)
XLOC_004211 NA non-coding upstream 1432165 31200219 ~ 31202839 (-)
XLOC_004212 NA non-coding upstream 1436871 31204925 ~ 31211308 (-)
XLOC_004216 NA non-coding upstream 2382164 32150218 ~ 32157526 (-)

Expression


Co-expression Network