G2313195


Basic Information

Item Value
gene id G2313195
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 27489728 ~ 27491272 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2645891
TACAGAAGATCACTTAAGAAATTCATTTTTCTGGTTATATTAAACATTTATTAGCTATGCATGAGGTTTACAAGTGCACAGGACATTGACATGAGGACACAGTAGGTTATAGCATGTGAAATGCTTGCCAGAAGTATAGCACATAAACCAAAAAAACGAGCGTCTTGGGACGTCCTTTCTTCTAAATGACAGGCCGTTAGTGACCTGTGGCTGTAGTCTGCTTGATGCACCTTCCACATGACTGGTGACAATAAAAGAGGAGCACTTCAACATTGATCACAGCGTTTTAATCAAGAGGAGATAATGAGACTTTGAGTTAATTATAGAATTAAAGGCAGGAAGTGGCTGCTAGGTAAGAGCTCATCAACATGATTAAAAGGAACGGAATAGACATCAATGAAAACTAGATCAAAATGTTCCTGTAGCTCACTGGCATTATTCATTGTTGGACATACAGGATCTGACAATAGGTGTATAATTGAATTCTGTTCTGAGCATCACTGTGGAATGAATATGATGCTCaaaatgagtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgcgtgtgtgagcgtATATTTGTGTGTTATTGAGTTTTAATAtctttgtggggaccagaagtcctcacaaggacgGTAAAACCAGTCCTCAAAAGGGGTTAGAGGTTTGGgcttaaggtttgggttaaggaaAACAGGATTtttaatgggaatcaattgtttggtccccacaagaatagaaaAACaaatctgagtgtgtgtgtgtgtgtgtgtgtgtgtctgcagagcAAGAGAACGCCGTGAATAGAGCTGTCTCACGGTGACAGCCAGGATCGTGACATCCTTTACGTACATTCATAATCAAGTAAGCCATGTAACTGCTCTTACTCTGCATTAACTCAGACAGGATAATCCCAGATAAGCCTTGGCATTATAAGCCACTCCAGAGTGGAAGTGGAGCCACTAGCTGCTATCCCCCGACGGTGATGAGagagttgacacacacacacacacacacaccgcttcAGTGTTATTGTCCGGGGGCCTGGCCTCAGAGTGAAAAGAGAATCACTTCCTCTAATGGAAAACTATTGTCTGACTGCTACTCCACTGACAACATCAGTTGAGAGGAAtagacatagggaataggatgccatttgggatgcagacacagAGTAGAGTTGTTTTAAACAAGGGAAGCTATTTTGGGATTTCCACTGCCCTTGTGGCCTGTTCAGATGATCTCAGACCAGTTTGGGAACCCTTTGTCCTGAATGCTGTTTTTCTGAATGCCTTTTTTCCTTCCTCTGTATTTCACTGACTCTAGACTATCTAAGCTTCTTGGCATACAATAAGGCACTGCAAGTGAATTATTTATTAATTTGAGTGGATTATATATACGGTAATGAACAAACCAAATGCAATTAGAAGTGTCGTTTTGAGCAATAGGATGTCAggcctgtggcatactgcattatTCATTTCTTTCTCTTCCCTTGCAGTCGGGTtacacagcagtggaggctggtgggag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2645891 True 1545 lncRNA 0.42 1 27489728 27491272

Neighbor

gene id symbol gene type direction distance location
LOC110489415 LOC106570218 coding upstream 114146 27316604 ~ 27375582 (+)
LOC110488195 LOC106588620 coding upstream 213282 27203437 ~ 27276446 (+)
LOC118946485 LOC106570234 coding upstream 286922 27197844 ~ 27202811 (+)
LOC110488194 LOC106570237 coding upstream 306442 27141022 ~ 27183286 (+)
LOC110489414 trappc9 coding upstream 373499 26828036 ~ 27116229 (+)
LOC118946492 NA coding downstream 44679 27535951 ~ 27536309 (+)
LOC110488197 LOC106570220 coding downstream 309295 27800567 ~ 27833055 (+)
parp10 LOC106588595 coding downstream 345390 27836662 ~ 27848059 (+)
LOC110488198 LOC106570221 coding downstream 356955 27848227 ~ 27863819 (+)
LOC110488200 LOC106570222 coding downstream 380889 27872161 ~ 27996123 (+)
G2313185 NA non-coding upstream 15906 27473518 ~ 27473822 (+)
G2313129 NA non-coding upstream 104309 27384832 ~ 27385419 (+)
G2313130 NA non-coding upstream 105002 27383083 ~ 27384726 (+)
G2313059 NA non-coding upstream 229977 27258969 ~ 27259751 (+)
G2312980 NA non-coding upstream 379355 27109502 ~ 27110373 (+)
G2313263 LOC106570219 non-coding downstream 99211 27590483 ~ 27653086 (+)
G2313453 NA non-coding downstream 405191 27896463 ~ 27961415 (+)
G2313457 NA non-coding downstream 412112 27903384 ~ 27903946 (+)
LOC110488207 NA non-coding downstream 592136 28083355 ~ 28091830 (+)
G2312933 NA other upstream 450543 27033799 ~ 27039185 (+)
LOC110488193 LOC106570239 other upstream 668832 26816398 ~ 26820899 (+)
G2312752 NA other upstream 756083 26733304 ~ 26733645 (+)
G2312300 NA other upstream 1164345 26325152 ~ 26325383 (+)
G2313197 NA other downstream 1827 27493099 ~ 27493735 (+)
kcng2 LOC106570224 other downstream 552683 28016566 ~ 28047334 (+)
G2314887 NA other downstream 1028983 28520255 ~ 28563595 (+)
G2314987 NA other downstream 1207468 28698740 ~ 28703424 (+)
G2316421 NA other downstream 2431112 29922384 ~ 29931480 (+)

Expression


Co-expression Network