G2314830 (LOC106570188)


Basic Information

Item Value
gene id G2314830
gene name LOC106570188
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 28438007 ~ 28442117 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2647707
CTGCTTTATTGCATTTTATGTATACAAATCTAAATAGAAACCTACATTGAGTAAAAAAGTAACAATTTAAAACTGGTCATATAAAATACATAAGGACTGTATAAAACAAAGTTTATATAGATCACATTTTGTACAAATGGATTTATGAATCATGCACAACTTGATAAGCGAGAAGGCAGGGTAATAACCATCTGTAACACACCATTATACATTtaaaagaaaaatacaaaaaataaatgaTTCACACAAATAAGCATGATGGGAGAATACACCTACCAGACACTTCATGAAATATGATTTCCAATAGCTAACACAAATACAGTCAGGTATCTACTTGCAGCCAAGTGTCAGCCTCCTCCTGGTTGAGGCAACCAGGGTTTTACaagttcatgatgccattgaccttaacaataaccccaagcacacatcaacatccacaaagaaatggttaattgaccacaaaaccTACATTTTGCAAAGGTCATCTCAGTCTCCGGGCTTGAACCccatgtggtttgaattgaagaaagCAGTCCATAAGCCCTGACGGAGGACATAATGgttctggaaagattctgtatggaggaatggtctaagatccctcccaatatgTTCTCCAATcttataaaacattttagaaagagTCTCTGTGTCGTTGTCCTTGCAAGTGGAGGGTGCTGGTGTTTTACCCCCATCTTTAaatgtttcattttttattacTGGTTAAACTAAAGCTCTTTCTCTGAACAATTATATCATTATAAAGTAATCTAATTTCCCTTTTTTTGAACCATGAAATATAGcttagtatttgtattatttattttatactgtctttttttgctcatctttttttaagggtgccaataataatggacctggctgtgtgttttaacAAAAGGTTCACTTCTTAATTGAATTAGGACAAGCATACAATGGATTGCACTTCAATTGATATGGCTGTTGTTTGTAGAAACAGGTGCCAGGTCTATAGAAATTGAGAACCACATGAAATGCCTTACCCTGGCTTGGTAGAAAAACGAAGAACACTAACCAATACTGTCAATGAAAGAAGAGCAATGGAAATGCTATCCAGAACTAACGGGCATCTCGGCAATTTATTTTGCGCTGCTGTTGCTATTGGGATATATCATTACATTCAGGAAAGTTAGGGCAAGTTAGCTAaatctttttttctctctgcttattttctttaaaaaaaaacataccatAGACAATTCCATCAAGAGACATATAGTAAGTAGGATACAATGTTAAACCCAAGAGGACATTGGGACTATGATACAACATTAACGTGATGTTTGGTGCATTTGATTCgcattcattattttttttttactgtagctGTCAGTGTGATATTGCCATTGTGATATGACATAGGCATTTACTGGTGTTCAATGTGAACATGAATGGATTCTCTGTGTGCTCTGATCCCTGAATAAATGTGTTTTCTAAATGGGTCTATTTCAAGAGAATTTCAGAGTAGCAGATCGCATGACTGGATAACATTTCGTACCGGTATGGTAAAGCCTCTGTGAAATTCCCCCAAAACAACATCAATTCAAAAGAATTCAAGAAGGATCCACTGTTATTTCATAATGGCTAAAAGATTAAGccgagtcctggactaaaaacacTTTCCATGGAGCATTTATGATGGAGATTctacatgttttttttgtcctTTGAATTTTTATTTTCAGCGTATAGCTGCCAAAACGCTTTAATAAATGTTTTACCTTGAGAGTAACTTGTGGTTAGGGGGAAACTGCAATCCCATATATTACTACACTGTGCACTGTGTTTGCTATGTTTTTGTGTTGCACACATTACTCACATTTAAACAGTTGTTAGAATCAATGCAGTGGTCAATCCGTATATCAGTATCGGCTGAATTACTTGTGTGTGTTTTAGTTAAAAATGGCTTAGTGACAGTAAATGATCCCGACTTAGAATGATAACGCTGAAAGTTTAGTCATTAAAAGCTGCAAGGCCAGAAAAAAAACTGTTGGATAACTGACATTCGTGTAAACATTCTAGCAAGCAAAGCTAGGCAATTAGTTATTTTACGAGTGACATCAGTTTGAGTCGGAGGAGCGGTTCTTTCTTCGCAAATAAGGCTGGCTATCACTAGATGATAgactctacagatgtaggatcttaatttgacctatgctgtcacagcaaaataatcctgcagcaacaggatttgaacgtttagtccataaCGTTGCTTGAGCGGTGGTAAGGCTTTtatctggccaaaagtaggcttCATGAAAAGTGAAATACTATATAaccgtgtgttagtgtgggttttcagtaaatGTATGTCAATTACAAAAGTTAATCTGCATTTCCTGTGGTGCAGGAAAAtcctcagcaacaaaagagtgatcaaattaagatcctacctcTGTATATAAGATCTGTAATGTAAGAGCTATACATAAATGTTCAAATAACTTTCATAGTCCTTAATGAAGCATGCTTAAGCAACAGACATTGGTCTATTTTGGTGAGAAAGATCGTTCTGTGACAATATCCTTGTGATTATGTCCTGTACGATCATTAAAGGCAAGTGATGGGCTTTAACTTTGCCCATGTGGTAGCGTTGTCTACCAGCTTAGAAAGGGAATGAGAGGAATGATAACATTTCATTATTCCATGTGAATTTCACAAATCCAATAACATGGCAGCACAAAAGGACCTCAATGACTTCTTATTATTCAATCCTGGTCCTAAAGATTTTGTTCTAAACTAGCACTAACAtatctgattcaaataatcaacttaTTGTGAAGACCTTCATAAACTGAATTAGGTGTATTAGTACTGGGCTGGAAAAAAACTGCTGAAAGATCTAAGAACACTCACTGTTTTATAATTGAAAGCTCCTAAATGGCTGCCTTGCTAGTCTCTATACAATCAATGGTTATTGGCCACTTTTCCTCATTCCATCTCTAAGGCCAGATTCCAAACTGACAACCAACTTCCTTCCATCTGCCCTTGACTCCCAACTCGCAGATCTGATCGGGCTGAACAGGTAAAAGCCATGTGGTGGAAGCTATGCAGAGTTACTATTATGTTTCCCACACCTATGTAGACTTTTTGAGAACTGTGAGGGGGAAGTCAACGTGGGCAAATGGAAGTGAATCAAGTTATGGGGTTGGAATCCAGCGTATACCTAGCAGGTTGAAGGCAGGGTGGCAGTGTTGGCTGCATCCAGTTGGCCAACAGCCAGCATCAGGATGTCCTTCTTTTCCTTATGAAAGCGAAGCTCCCGGCCGGCCAGCCTGGCCTCCTCAAGTTCTCGATCTGTTGCCGCCACCTCCTGGGCGATGGTGCCAGCCACGCCTTGCTCTCGGTTCACCCAATCAGCAGCCATTTGGGTACGCATGTCATCATCCA

Function

NR:

description
LIX1-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2647707 True 3432 lncRNA 0.38 3 28438007 28442117

Neighbor

gene id symbol gene type direction distance location
LOC110488215 LOC106570189 coding upstream 16 28436066 ~ 28437991 (+)
LOC110488210 LOC106570183 coding upstream 53119 28299685 ~ 28384888 (+)
LOC110488207 NA coding upstream 346177 28083355 ~ 28091830 (+)
kcng2 LOC106570224 coding upstream 393419 28016566 ~ 28047334 (+)
LOC110488200 LOC106570222 coding upstream 441884 27872161 ~ 27996123 (+)
LOC110488216 LOC106570190 coding downstream 26633 28468750 ~ 28471360 (+)
LOC110489419 ssr2 coding downstream 541071 28983188 ~ 28994465 (+)
LOC110489420 LOC106570197 coding downstream 575444 29017561 ~ 29042431 (+)
LOC110488225 LOC106588560 coding downstream 727722 29169839 ~ 29271629 (+)
LOC110488226 rpc7l coding downstream 773519 29215636 ~ 29223759 (+)
G2314802 NA non-coding upstream 34455 28403246 ~ 28403552 (+)
G2314739 NA non-coding upstream 145464 28292291 ~ 28292543 (+)
G2314719 NA non-coding upstream 165626 28271735 ~ 28272381 (+)
G2314677 NA non-coding upstream 223267 28214472 ~ 28214740 (+)
G2314883 NA non-coding downstream 74335 28516452 ~ 28553988 (+)
G2314975 NA non-coding downstream 220719 28662836 ~ 28788903 (+)
G2314988 NA non-coding downstream 259890 28702007 ~ 28708584 (+)
G2315279 NA non-coding downstream 352723 28794840 ~ 28795053 (+)
G2315294 NA non-coding downstream 364861 28806978 ~ 28807196 (+)
G2313197 NA other upstream 944272 27493099 ~ 27493735 (+)
LOC118946485 LOC106570234 other upstream 1235196 27197844 ~ 27202811 (+)
G2312933 NA other upstream 1398822 27033799 ~ 27039185 (+)
LOC110488193 LOC106570239 other upstream 1617111 26816398 ~ 26820899 (+)
G2314887 NA other downstream 78138 28520255 ~ 28563595 (+)
G2314987 NA other downstream 256623 28698740 ~ 28703424 (+)
G2316421 NA other downstream 1480267 29922384 ~ 29931480 (+)
tmem79a LOC106569868 other downstream 2375911 30817937 ~ 30822555 (+)
G2317455 NA other downstream 2391613 30833730 ~ 30835101 (+)

Expression


Co-expression Network