G2315380


Basic Information

Item Value
gene id G2315380
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 28855845 ~ 28885284 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2648307
agaaatatggaaaggccacttgatttcaacatctgaacataGTGGACAGGCTAGCATGTTGTTTAAACAGTTGGAGGTAGAAGGGTGTGTTCACAATGCAACTgttttaccttgttagctagcaaatagatccaagttaGCTAAACTTGACAAGGAGCTAGCacgtgggcttgtgcttgagagatgGAGCCGCGTTACATTTTCGGTAATACCTGCGACAAGGAGTTAGTTGTCAtcattagtgaatgtgcattatgaACAAAACGGGAATTTTCATAGGACTGACGAGAAAGCCAGAAAGAGTTATTGCCAAAAAGCAGGTTAAACTACACTgcccaaaaaataaagggaacactaaaataacacatcctagatctgaatgaattaaatattcttattaaataattctctttacatagttgaatgtgctgacaacaaaaatcaTCAAcaagctgatccaactttgatgtaatgtccttaaaacaagtcaaatgaggctcagttgtgtgtgtggcctccacgtgcctgtatgacctccctacaacacctgggcatgctcctgatgaggtggcggatggtctcctgagggatctcctccgagacctggactaaagcatccgccaagtCCTGGACAGtgtgtggtgcaacgtggtgttggtggatggagcgagacatgtgGTTCCAGAtctgctcaattggattcaggtctggggaacgggcgggccagtccatagcatcaatgccttcctcttgcaggaactgctgacacactccagccacatgaggtctagcattgtcttgcattaggaggaacccagggccaaccgcaccagcatatggtctcacaaggtgtctgaggatctcatctcggtacctattggcagtcaggctacctctggcgagggttgtgcggcccccccaaagaaataccaccccacaccatgactgacccaccaccaaaccggtcctgctggaggatgttgcaggcagcagaacgttctccacggcgtctccagactgtcacgtgctcagtgtgaccctgctttcatctgtgaagagcacagggcgccagtggcgaatttgccaatcttggtgttctctggcaaatgccaaaacgtcctgcacggtgttgggctgtaagcacaacccccacctgtggacgtcgggccctcataccaccctcatggagtctgtttctgaccgtttgagtagacacatgcacatttgtggcctgctggaggtcattttgcagggctctggcagtgctcctcatgctcctccttgcacaaaagcggaggtagcggtcctgctactgggttgttgccctcctacggcctcctccacgtctcctgatgtactggcctgtctcctggtagcgcctccatgctctggacactacgctgacagacacagcaaaccttgccacagctcgcattgatgtgccatcctggatgagctgcactacctgagccacttgtgtgggttgtagactccgtctcatgctaccactagagtgaaagcaccgccagcattcaaaagtgaccaaaacatcagccaggaagcatgggaactgagaagtggtctatggtcaccacctgcagaaccactcctttattgggggtgtcttgctaattgcctataatttccaccggttgtctattccatttgcacaacagcatgtgacatttattgtcagtgttgcttcctaaatggacagtttgatttcacagaagtgtgtttgacttggagttacattgtgttgtttaagtgttccctttatttttttgagcagtgtattttgataaaaataattaaatgaatgggtcttatggttgtggaaggctgatatttagcctaggtataatctaaagccctgaattcattagatCATTGCTAACGGTTTCAAACGCAGTCGTTTTTACCTTTAAAATTGTACAAAGCTTAATTAcagaaaacatatttaaaaatcCAGATATAGCTCACAAGTTAATATGCCATAATCGCCCAGCCCAAAGGAATACTTTGAGTGACCACTCGTTGGAAGCCCACTAAAGCACAGTGTAGGAAGTGTAAAATGCATCTGGAAAAAGGGATGTCAGAGGCACATTTGTTCTACGTAAAGTTTCAATCTGAACATGCCACAATTTGGCCCAGTTGACCGCGGCCTAGGATAGAGTCACTGGTAAAAGTTGGCATGTTTTTTCCTCATGCAAGAAAGATATTCCCCTGAATATTCAACCACTGCATCCTTCAGTTGAAGTGAATTTACTACAAATATAATATGTTTTCATCACCATAAATCAGGAATGTGGTCATACTAAAATCTGAATCAAGTTTTTCTAATCTAATTGAAATCTCTATAATCTGCGGGTCTGGATTTTCTGGAAACCTGATTTTCTTTAGGCTAAATATGTCTGCACATGTATTTTTACGCAGCTGCTGCACACTCCGCTGCCCCCTCCCTGATCTGCGATGAACACCCTCGAAGTATTTAGGCTACACCTTTGTTGTACAAAGGACATGGTCGATACGTTCCAACTATTGCATTCCATACCTCTGTAGGCTATTAAGCACAAGTGCGATTTCATGTGATTCTTTTCAGGAGGGGTTGTTTTAGAGGAGCTACACCATGAAGAGGACGTGAACAGGACATGAACAGGACGTGAGCGCAGTAATTGTACCTGCCACaccagagatgtaaacaaatgcgGGCGTGGAAGCAGAATCAGAAGCACACCGTCTCTTCTGCCAGGAATCTATTGACTTTGGGTTCAAAACGAGTAGCCTATACGGACAGCCATATTTCTCATGCCATCAAGAATAAAAAGTTCAGTAAAATTCTACCATCTGCAGTCAATTAGCCTTGTTCATTAAATCAAGAATTGAACAGTAGTTGGCTAGCTGTCTGTACTTTCCAGGGCAGAACAAACGCATAACCATTGACAACTTTCTCCTATCAAATCAGAATATCGGGGAAGGgtctactctacattatccaCTGCCTCAAAAGTTAATAGAACTAACACCATTTGCAACTGCCTTTCTGTTCATCAGCTGGTTTGAATGTGTGAAAAGTTTATAAAACCCATTGATGCTATAGATTACAACCTCCCTCCAAATTATGAACGAGGTAGACTACAGTTCcatttaaatgtgtttttccccATACAGGTAGGCCTACTGCTATAGTTGATGTAGCCTACTACTATTGGTCATGTTTCTGACATTATCATACTATGAAACTATGAAGCTAAGTGAATGGTATAAATATTTTGGcactaaaaaaaactatttcaggCACTTTGTATggtgtaagtgctgttattgtaaaaaGGAAACATCGCGGcttagccgcaaagtggtaggccacacaaactcacagaacaggcacaccgagtgctgaagcgtgtcaattgtctgtcctcagttgcaacactcactaaagagttccaaactgccttctGGAAGCAaaatcagcacaataactgttcgtcatgagcttcattaaatgggtttccacggCAGAGcaactgcacacaagcctaagatcaccatgcgcaatgccaagcctcggctggagtggtataaagctcgccaccattggactctggagtagcagaaacacattctctggagtgaggaATCACTTCACTATcaggcagtccgacggacaaatctgggtttggcggatgccaggaaaatgTTACCGGACTGAATCCATAGAGCCAACTAAAGTTTGTCGGAGGAAGAATAATtgtgtatttttttatacatatctgttttaccgtttagaaatgaaatCACTTTATGTATCTGGTTCCACCCATGTGAAGAAAtcagaggtatttggacatatttcttgcacgcaatgactacattaagCTTGTGACTACAACCATTTTGTATACaattgcagtttgttttggttgtgctaTGCTTTGCCCAATAGTAACTGAACGGTGAATGATGACTGGAGTAATTTTCTTTCTAAGTGAGTAGataagatgtttctgaacacttctaaatGAATCCGAATAATTCCATGATTAAGAAAAATCATGAATCAACCATGAGTAATGGCAAGTGAGATGCCGTTTAGAGGCTACAACAAAATATGCTATCTTCTCACCATTACCGATAACATGGGAGGTTAGCGTTTTCTTGGGGTATGATCTTTATTCATGATTTTGGGGGTATGATtgtcattattcatgattcattcacgATTATCCGTAATCAAGGTAGCATCcgcattaatgtagaagtgttaaaAAAtatctattcttatttacaataacatttACTCAAAAATTACATAAGACATTTTTCACCATTCATTTTGAGCAAAACATTATCCGAAACACAACCTAAACAAACTGCATATCCATCCATCAAGTTTGTAGAGTAGACaatgtgtgctaggaatatgtgACCAAATACTACacctttgactac

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2648307 True 4455 lncRNA 0.43 2 28855845 28885284

Neighbor

gene id symbol gene type direction distance location
LOC110488216 LOC106570190 coding upstream 384485 28468750 ~ 28471360 (+)
LOC110488215 LOC106570189 coding upstream 417854 28436066 ~ 28437991 (+)
LOC110488210 LOC106570183 coding upstream 470957 28299685 ~ 28384888 (+)
LOC110488207 NA coding upstream 764015 28083355 ~ 28091830 (+)
kcng2 LOC106570224 coding upstream 811257 28016566 ~ 28047334 (+)
LOC110489419 ssr2 coding downstream 97904 28983188 ~ 28994465 (+)
LOC110489420 LOC106570197 coding downstream 132277 29017561 ~ 29042431 (+)
LOC110488225 LOC106588560 coding downstream 284555 29169839 ~ 29271629 (+)
LOC110488226 rpc7l coding downstream 330352 29215636 ~ 29223759 (+)
LOC118946464 NA coding downstream 481143 29366427 ~ 29369552 (+)
G2315355 NA non-coding upstream 11590 28844022 ~ 28844255 (+)
G2315335 NA non-coding upstream 23765 28831853 ~ 28832080 (+)
G2315322 NA non-coding upstream 33580 28821954 ~ 28822265 (+)
G2315320 NA non-coding upstream 34346 28821170 ~ 28821499 (+)
G2315312 LOC106562530 non-coding upstream 39724 28815835 ~ 28816121 (+)
G2315393 NA non-coding downstream 5785 28891069 ~ 28891287 (+)
G2315517 NA non-coding downstream 123459 29008743 ~ 29008952 (+)
G2315522 NA non-coding downstream 129300 29014584 ~ 29014872 (+)
G2315529 NA non-coding downstream 131830 29017114 ~ 29017393 (+)
G2314987 NA other upstream 152421 28698740 ~ 28703424 (+)
G2314887 NA other upstream 292250 28520255 ~ 28563595 (+)
G2313197 NA other upstream 1362110 27493099 ~ 27493735 (+)
LOC118946485 LOC106570234 other upstream 1653034 27197844 ~ 27202811 (+)
G2316421 NA other downstream 1037100 29922384 ~ 29931480 (+)
tmem79a LOC106569868 other downstream 1932744 30817937 ~ 30822555 (+)
G2317455 NA other downstream 1948446 30833730 ~ 30835101 (+)
G2317562 LOC100196669 other downstream 2212335 31097619 ~ 31127687 (+)
G2317685 LOC106569887 other downstream 2336833 31222117 ~ 31223562 (+)

Expression


Co-expression Network