G2315788


Basic Information

Item Value
gene id G2315788
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 29415641 ~ 29418492 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2648735
TGTAATCAACATGTTTATTGGTTTGAAATAAAATGGACTGGCGGCTAGCTACAATGGTAGAACTAAGCAAGAAGCGTGGCGGATTGACAATCAGTGAAAAAGATCCAAAGAAAGTAACTGGAATTTTACTCCCCTTACATTTTTGAGGGATTTTAAGTCCACTGTGAATTGCTAAGGATCTGGCTATGACCCATCAAAAATAGAATCCTTTTGACAGCATTAGGTTTTGAAAGTTGAAATGTAAAAGGGAAAAATAATGAAAAGGTCCAGAATCATGGAGCAGGTCAGTCAGCGTACAAAGTTGACTATGAATGAGTGACGGTCTAGCAGTTGAAAGGGAAGCCTGGTGTAAAGGTCTGGGCCATATTCAGTACAGACTTAGAGCAGTTCTAAGGCCTGTTCCTGAAACGCCCCTCCCTGTGTGTCGTGGTTCAGTTAATTAATGACTTATGGAATTCTAAAAAGACCTGATGATTGAATGCATATATGGATTTCACCAAGCAAGGGCCACAAAATTGCAACAACAAATGAATGACATATCCAAAAATCATCCAATCATAAAACTGAAGACACGGGGCCCCCAATAAATGTGACAAAAAAGGGCTCCCccgaaaaaaagaaagaaattcaCATATTGCATTTCAAATAACAACAAGGGTTATATTCTTACGACAAcacaaaataataaaacatttggtTTAGCAGCCAAAATCACAGGACAAGTCTCACTCTGTTTCAGTTCAAAAGGTTTGAAGGGCAAGTCACTCGCACCAAAATATTAAGCTACACACAGTTACACATACTCTAAGTATGCCCCACAGTGGATAGTATAAGGGAAATGCAGAGCAACTTCAAATCAGAATTGTGACAATCATGTACCCAAAGACAGAGCTATTCTGCACAGTGTTGAAGTGTTCGGTTTTCACAGGTGCCCCAATATCAAAATAACCTGAACACCATCTTGTTGGCCACAAGGCTGATGTCCTTTTCACAACATTGTCACCAATAAAGCACCATAAGAGATGGATGACATGAGATTGTAAAATGTCTGGACCAATGAACAGTGCAGTTTCTATCAAGaaatttaaatgttttttcaaGAACCCTCATATTAAAATCTGAACCTTCCACTGCTTTTTTCCACTTTTCATTATTCCCTTTCTAAAATCAGGTTTAACCTGGGATATCAGGTAGGTGAAATTAATTAGGTGCAATTAATAGAACTGAAAACCAGCAGTACTCCAGACCTCCAGGGTAGGAGTGAATGCCCCTTCCATAGAACATAGTCCCCTTCCTAGTCATCTTCCAGACCTGAAAGTATTGCGCTTCATCAAACATGTCACTGGTTAATACCAACATTGTCACAGAAACATTCAGGAATGTTTTTCTTGcttttaaaacatttaattttGGGGTAGTTGTTGAAAtatagatttcccttcactattTACACATTGGAATTGACCTATATGGACAGTGATATATTGTAATGGTTCTGATAGAAGACATATGATAATGCATATGCATAAGCATGGAgacaattgaaagggaacagtttggagattatggaATCATTTTTAGACCAACGCTGaggacaacagttcacctgacatccaaacattacactgctgattttatgtgcattttacatttagtgTACTTTTCTTCGCATTTGTTAATAccaaaatctgaaaatactctggatacaaccagtaagggagagatgggggcaacttctgaacttgagcaccgcaCACGACAAGAaaggctgtcagtcaaaacccatacagcgctgtgacacgcagagccagagctctgacgtcatttatagcatgttactgtagagccactgcgttccaatttagacttatcagtgcccaaatctgccattttcaacccatAAATGGGtttgagtgtaaagggttaagacAGGGGTTTGCAAAGTGGTTTTTGTTTCCTTGTGCTTCTGTAAATAGATGTGACATTCAATCAAAATCGGGAATTCGGTGTCATTGAAGGTGCATTATTTGGTCACCTACCATGTACAGGTAACATGCAACATGTTATATAGCGTTAAAACGATAGTTGTCGCTAGAAAAACTTGCTAATGATCTAGGCAAAGTTAAATATCTTAAAAGTGCAACACACCATGAGTAAGAAAATACATTGCCTGTTTCAAAGTCAGGCCGAGGAAAGGGAAAGAAAAGCAAGTACAATTACTATTATGTATACACCTTAAAGCCAAGAACACATCTTTTTATAAAGCACAACGACATAGCAAAAAGCTATCAAGTCTAACACCAACGACCCTCATAACTAAAAACCTATTCAAAAACTGGATTTTTATGTCAAATGGAAATTTATTATGAATGTTTACTAGATTTCCCcaaatttgttttgtttttgtattcattTGCTTATGTTTAGATTCTTGTTAAAGAAACCGTATGTGTACTCTCTAAACTGTAATGCATTTGACACCTAGCAGCCAGACATCATAATtgggcaacaaacaaaaaaaattatacatCCGAAACACATTTCCTCTTGAGCCTTGAATTTCTCATCATTATTGGTTTGACTTGACAATTTCAATTCTGGGATATACAATATCCCCAACTGGCAAGTAAGTTTTTTTTGCCTTTCAATATATATCTATCGATATATAGCAAGTACAATTTCTATATAGGTCTTAACACTTTCCAGTTACTTAAACAGCAGAAAACTAGCATTCAAAGATTAGCTAATTACTGTATGTTGACGCCCCAAATTCCACAGAGAAGAACCAAGGGTTCTTGGTCATCCTCGGAGGCTTGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2648735 True 2818 lncRNA 0.37 2 29415641 29418492

Neighbor

gene id symbol gene type direction distance location
LOC110488231 NA coding upstream 39523 29369669 ~ 29376118 (+)
LOC118946464 NA coding upstream 46089 29366427 ~ 29369552 (+)
LOC110488226 rpc7l coding upstream 191882 29215636 ~ 29223759 (+)
LOC110488225 LOC106588560 coding upstream 200500 29169839 ~ 29271629 (+)
LOC110489420 LOC106570197 coding upstream 373210 29017561 ~ 29042431 (+)
LOC110488235 LOC106570205 coding downstream 20421 29438913 ~ 29447508 (+)
LOC110488238 LOC106570207 coding downstream 70385 29488877 ~ 29491478 (+)
LOC110488239 krit1 coding downstream 77563 29496055 ~ 29507318 (+)
LOC110488242 LOC106570209 coding downstream 96183 29514675 ~ 29520674 (+)
LOC110489421 NA coding downstream 237419 29655911 ~ 29657071 (+)
G2315818 NA non-coding upstream 9212 29406075 ~ 29406429 (+)
G2315772 NA non-coding upstream 20077 29393847 ~ 29395564 (+)
G2315787 NA non-coding upstream 64777 29350355 ~ 29350864 (+)
G2315786 NA non-coding upstream 65625 29349460 ~ 29350016 (+)
G2315770 NA non-coding upstream 87471 29326886 ~ 29328170 (+)
G2315844 NA non-coding downstream 42820 29461312 ~ 29461623 (+)
G2315929 NA non-coding downstream 177046 29595538 ~ 29628782 (+)
G2316285 NA non-coding downstream 227690 29646182 ~ 29646446 (+)
G2316291 NA non-coding downstream 235794 29654286 ~ 29654550 (+)
G2316299 NA non-coding downstream 245524 29664016 ~ 29664316 (+)
G2314987 NA other upstream 712217 28698740 ~ 28703424 (+)
G2314887 NA other upstream 852046 28520255 ~ 28563595 (+)
kcng2 LOC106570224 other upstream 1368307 28016566 ~ 28047334 (+)
G2313197 NA other upstream 1921906 27493099 ~ 27493735 (+)
LOC118946485 LOC106570234 other upstream 2212830 27197844 ~ 27202811 (+)
G2316421 NA other downstream 503892 29922384 ~ 29931480 (+)
tmem79a LOC106569868 other downstream 1399536 30817937 ~ 30822555 (+)
G2317455 NA other downstream 1415238 30833730 ~ 30835101 (+)
G2317562 LOC100196669 other downstream 1679127 31097619 ~ 31127687 (+)
G2317685 LOC106569887 other downstream 1803625 31222117 ~ 31223562 (+)

Expression


Co-expression Network