G2317562 (LOC100196669)


Basic Information

Item Value
gene id G2317562
gene name LOC100196669
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 31097619 ~ 31127687 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2650704
CGCTGAGCGAGAAAAGTAGCAATTGCTGAACATCGCAGAGAGAAAACTTTACTTTGAAAAAGGACAGCACAAAACGATCCAAATGGCTGAACAGCACTCCGACCTGGAAAAGGCCATCAACACTTTGGTCACAAAGTTCCATGCCGCTGCGGCCAATAAAGGTCCCACGCTCCAAACCAAAGAGTTCaaagacctcctctcctcccagctgcccaacTTAGTCAAGACTGGAGGCTCAGAGCAGGGCCTGGGCGAGGTGATGAGACAGATGGGTGTGTCGGACGGCGAGGGAATCACCTTCAAACACTTCTGGGGCTTGATCCAGTCACTGGCCACCACGCAGCATGGTCTTCTCAGCAGCGAGAAGGTGTCCAAGTGCAGCTGTGTGCTCCTGTGAGGTCCATGCCTTCTGATGGTGGTGTGAGCCAGGGGGAACCAGACAGTCTCATAGTATCCCACCCAGTGTCAGTACCCCTTCTCACCGTACTGCTCCCATCCAGACCTGGACACTCACATAGTACTCACCCCCTCCAGGACAGGCCTTTTTATGTACATCTCCCATGCTTGGTAGTGCCAGCAGTGCTCATCTCTTAGCTCTATACCACTTGGTTTACAGGATTTTTGTTGTACATGCTAGTGTTGGTCTTTCCATCCAAAAAAACCTGAACGGCTTTCCTTTTTGGCCTACTACCAGTGTAACCACTACAAAGAATCCTTAGATGACATATGACCCAAAGTGAAATCAGAAAACCATGAGCCAGCTTTAGGTGCTTTGCAAGAAATAAATATGAATTTACATATGGCAGTACACATTAGTGGAAAGCACCTTTGAGCCACCAGTAGTCTCATACATACAGTGCTGGTGATGCAGTGTCCCCATAGCATGTTTCCTTAAACAATGTTTTCCCCACTGTGGTATTGCAGTTTTGTATTTATACTTTGTAATTCTCTTTATACTGGCCATTGTAATAACATCGTAAAACATGACCAAAAATGTTCTAATAAAATATTGCAACAATGGTGACCTCcatt
>TU2650705
CGCTGAGCGAGAAAAGTAGCAATTGCTGAACATCGCAGAGAGAAAACTTTACTTTGAAAAAGGACAGCACAAAACGATCCAAATGGCTGAACAGCACTCCGACCTGGAAAAGGCCATCAACACTTTGGTCACAAAGTTCCATGCCGCTGCGGCCAATAAAGGTCCCACGCTCCAAACCAAAGAGTTCAAAGACCTCCTCGCCTCCCAGTTGCCCAACTTAGTCAAGactGGAGGCTCAGAGCAAGGCCTGGGCAAGATGATGAAACAGATGGGTGTGTCGGACGGTGAGGGAATCACCTTCAAGCACTTCTGGGGCTTGATCCAGTCACTGGCCACCACGCAGCATGACCTCATTAGTAAGAAAGTGTCCAAGAGCAGCTGTGTGCTCCTGTAAGGTCCATGCCTTCTGACGGTGGTGTGAGCCAGGGGGATCCAGACAGCCTCATAGTATCCCACCCAGTGTCAGTACCCCTTCTCACCGTACTGCTCCCATCCAACCCTGGACACTCACATAGTACTCACCCCCTCCAGGACAGGCCTTTTTATGTACATCTCCCATGCTTGGTAGTGCCAGCAGTGCTCATCTCTTAGCTCTATACCACTTGGTTTACAGGATTTTTGTTGTACATGCTAGTGTTGGTCTTTCCATCCAAAAAAACCTGAACGGCTTTCCTTTTTGGCCTACTACCAGTGTAACCACTACAAAGAATCCTTAGATGACATATGACCCAAAGTGAAATCAGAAAACCATGAGCCAGCTTTAGGTGCTTTGCAAGAAATAAATATGAATTTACATATGGCAGTACACATTAGTGGAAAGCACCTTTGAGCCACCAGTAGTCTCATACATACAGTGCTGGTGATGCAGTGTCCCCATAGCATGTTTCCTTAAACAATGTTTTCCCCACTGTGGTATTGCAGTTTTGTATTTATACTTTGTAATTCTCTTTATACTGGCCATTGTAATAACATCGTAAAACATGACCAAAAATGTTCTAATAAAATATTGCAACAATGGTGACCTCcatt
>TU2650702
ACTGAGCGCACTGTAATTTCCCCCATATCTTTCTCGACTGACACGGAAGGTGGAATCGAATTGCAGTTGGATTTTTTTGGGGGAGTGGGAGGATTTAGGAAGCAATGGAACACTGAGCGAGAAAAGTAACAATTAGCATACCGAACGTCGCGGAGAGAAAACTTTACTTTGAAAAAGGACTGCACAAAACGATCCAAATGGCTGAACAGCACTCCGACCTGGAAAAGGCCATCAACACTTTGGTCACAAAGTTCCATGCCGCTGCGGCCAATAAAGGTCCCACGCTCCAAACCAAAGAGTTCaaagacctcctctcctcccagctgcccaacTTAGTCAAGACTGGAGGCTCAGAGCAGGGCCTGGGCGAGGTGATGAGACAGATGGGTGTGTCGGACGGCGAGGGAATCACCTTCAAACACTTCTGGGGCTTGATCCAGTCACTGGCCACCACGCAGCATGGTCTTCTCAGCAGCGAGAAGGTGTCCAAGTGCAGCTGTGTGCTCCTGTGAGGTCCATGCCTTCTGATGGTGGTGTGAGCCAGGGGGAACCAGACAGTCTCATAGTATCCCACCCAGTGTCAGTACCCCTTCTCACCGTACTGCTCCCATCCAGACCTGGACACTCACATAGTACTCACCCCCTCCAGGACAGGCCTTTTTATGTACATCTCCCATGCTTGGTAGTGCCAGCAGTGCTCATCTCTTAGCTCTATACCACTTGGTTTACAGGATTTTTGTTGTACATGCTAGTGTTGGTCTTTCCATCCAAAAAAACCTGAACGGCTTTCCTTTTTGGCCTACTACCAGTGTAACCACTACAAAGAATCCTTAGATGACATATGACCCAAAGTGAAATCAGAAAACCATGAGCCAGCTTTAGGTGCTTTGCAAGAAATAAATATGAATTTACATATGGCAGTACACATTAGTGGAAAGCACCTTTGAGCCACCAGTAGTCTCATACATACAGTGCTGGTGATGCAGTGTCCCCATAGCATGTTTCCTTAAACAATGTTTTCCCCACTGTGGTATTGCAGTTTTGTATTTATACTTTGTAATTCTCTTTATACTGGCCATTGTAATAACATCGTAAAACATGACCAAAAATGTTCTAATAAAATATTGCAACAATGGTGACCTCcatt

Function

NR:

description
protein S100-A13-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2650704 False 1032 TUCP 0.47 3 31097619 31127687
TU2650705 False 1029 TUCP 0.46 4 31097619 31127687
TU2650702 True 1147 TUCP 0.47 3 31121088 31127687

Neighbor

gene id symbol gene type direction distance location
LOC118946481 NA coding upstream 199647 30888810 ~ 30898886 (+)
tmem79a LOC106569868 coding upstream 275064 30817937 ~ 30822555 (+)
LOC110489445 NA coding upstream 359234 30735898 ~ 30738385 (+)
LOC110488253 LOC106569864 coding upstream 552625 30509313 ~ 30544994 (+)
LOC110488252 LOC106569863 coding upstream 872977 30191475 ~ 30224642 (+)
LOC110488267 NA coding downstream 15853 31143540 ~ 31146770 (+)
LOC110488268 thap7 coding downstream 18397 31146084 ~ 31155830 (+)
LOC110488271 LOC106569876 coding downstream 29538 31157225 ~ 31173468 (+)
LOC110488272 LOC106569877 coding downstream 46551 31174238 ~ 31176355 (+)
LOC110488286 chtop coding downstream 207070 31334757 ~ 31340531 (+)
G2317614 NA non-coding upstream 2533 31094845 ~ 31095086 (+)
G2317610 NA non-coding upstream 5947 31091436 ~ 31091672 (+)
G2317595 NA non-coding upstream 19055 31078169 ~ 31078564 (+)
G2317594 NA non-coding upstream 20433 31066321 ~ 31077186 (+)
G2317557 LOC106569871 non-coding upstream 96555 30997945 ~ 31001064 (+)
G2317638 NA non-coding downstream 21376 31149063 ~ 31149263 (+)
G2317639 NA non-coding downstream 21918 31149605 ~ 31149856 (+)
G2317640 NA non-coding downstream 24063 31151750 ~ 31151964 (+)
G2317642 NA non-coding downstream 28478 31156165 ~ 31156364 (+)
G2317670 NA non-coding downstream 82015 31209702 ~ 31209911 (+)
G2317455 NA other upstream 262518 30833730 ~ 30835101 (+)
G2316421 NA other upstream 1166668 29922384 ~ 29931480 (+)
G2314987 NA other upstream 2394195 28698740 ~ 28703424 (+)
G2314887 NA other upstream 2534024 28520255 ~ 28563595 (+)
G2317685 LOC106569887 other downstream 94430 31222117 ~ 31223562 (+)
LOC118946484 jtb other downstream 489487 31617119 ~ 31621139 (+)
LOC110488305 LOC106569913 other downstream 807196 31934883 ~ 31988737 (+)
G2318792 NA other downstream 825935 31953622 ~ 31954513 (+)

Expression


Co-expression Network