G2317685 (LOC106569887)


Basic Information

Item Value
gene id G2317685
gene name LOC106569887
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 31222117 ~ 31223562 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2650838
TGGCAGTACATTTTATTTTAGTGTGTTAATAGAAAATAAATTAAGGAAAACAATCATGATCAAGAGGaataaaacaaacacaaaacataaTATACTCCCATATGTGGCACTACCAGATCCACGGAGTGCTGAAATAATAAGTGCACAACCGTTGTACTACAGGTCAGGGGGTAATAAAGGAGTGTGAATCACTCTGGAGAGGTACTCTACTTGGCATTATCTCTATTTACTGAAACACTATAAAACATTGTATGATGACAAACCTGTTGTAGGCGGAGCAAAATTAAAATGCCAGCTACGCCCATCAAATTCCATTCTAGTGGACCATATTAGGCAATGCTGCACATTAATGTCTTGTCAACATCAACACCACCTGTGTATTAAATATCCTCAGCAACTCAGTTCACAACTGTCAAAGTATTCCCACTGCAACATGGCACCAGTCCTGAGTACAGGCTGGTCAGCTTACAAACACAAAGCAATAACCCATGAAGGCTTTTCAATTGAAATGGAGAGGAACCTCAATGCTATCAGAACATCTTGTTTTCATCATCTTCTATATTACAATCTTTTCATTCTTTCCATTTCCTTGGCTGGCAAGATACTCCACATCCTTTGGGACTCTCCCTCTAATCTTCAAACTCACGTCTCATAACCCTTCGCAATTTCCCAACCGCCTTTAAATCAAACTTCAAGCTCACTCCTCAATACCTGCCACTTTACCTACTGGTAGACCTTCTCAGCCTAGTATTtgctcccttccccataatatcTACCTCTCTTCAAGCGCTCATCTCTGGCTCTCCATCAAAGAGAAATGTTGTAACTTCAGGCAAACCCCACGCTGTCTCAGCATTTTAAAAATATTAAACACTACAGTCAATTGGTTTAATTGGATACTAAAATGCTAACGTCGGCTGTTGTTAAAAGCCAGACCTCAATTTCAGCACAATGAGCATACGGTACATCAGCATGGTTCCTGCCTTCTCTAATGCGCACAAGAGGCTAATCTCTTCAGTAACAATTGTTAGTTTCGTTGCTGTTGCAAACACTCATAATCTAACTCGGACTAGAGTCATTAGTCTCCTCGTGGGAGTTGGAACTAGGAATTGGGGTTGTAAGGGTACCACTGGAGGACTGTCGTATCCCACAGTGCCCCTCTCTCAGTGCTCGGAGTGCTGTTTCTTGTGGAAGGTGGAGCGCATGCGGCTCCAGAACGAGTGGTTCCTCCTGGTCTTCCTCTCACTGCCACGGACCGACTCGGCCTCGCGTTGGCGAATCTGGCGGACCAGGGCGGCGAAAACCTCGTCGATGTAGTAGCGAAATGCCGCAGAGGTCTCGAAGAAGGGGCACTGGAACTCCCTGGCCAGctccttcccctc

Function

NR:

description
GTP-binding protein Rit1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2650838 True 1382 TUCP 0.44 2 31222117 31223562

Neighbor

gene id symbol gene type direction distance location
LOC110488272 LOC106569877 coding upstream 45762 31174238 ~ 31176355 (+)
LOC110488271 LOC106569876 coding upstream 48649 31157225 ~ 31173468 (+)
LOC110488268 thap7 coding upstream 66287 31146084 ~ 31155830 (+)
LOC110488267 NA coding upstream 75347 31143540 ~ 31146770 (+)
LOC110488269 LOC100196669 coding upstream 94438 31120914 ~ 31127679 (+)
LOC110488286 chtop coding downstream 111195 31334757 ~ 31340531 (+)
LOC110488285 LOC106569884 coding downstream 121685 31345247 ~ 31352895 (+)
LOC110488277 LOC106569878 coding downstream 147149 31370711 ~ 31485734 (+)
LOC110488278 LOC106569880 coding downstream 273888 31497450 ~ 31517784 (+)
LOC110488276 LOC106569890 coding downstream 298696 31522250 ~ 31542403 (+)
G2317672 NA non-coding upstream 10918 31210954 ~ 31211199 (+)
G2317670 NA non-coding upstream 12206 31209702 ~ 31209911 (+)
G2317642 NA non-coding upstream 65753 31156165 ~ 31156364 (+)
G2317640 NA non-coding upstream 70153 31151750 ~ 31151964 (+)
G2317639 NA non-coding upstream 72261 31149605 ~ 31149856 (+)
G2317695 LOC106569881 non-coding downstream 11425 31234987 ~ 31308758 (+)
G2317696 LOC106569883 non-coding downstream 18162 31241724 ~ 31242509 (+)
G2317754 NA non-coding downstream 88859 31312421 ~ 31312820 (+)
G2317866 NA non-coding downstream 303837 31527399 ~ 31527748 (+)
G2317562 LOC100196669 other upstream 94430 31097619 ~ 31127687 (+)
G2317455 NA other upstream 387016 30833730 ~ 30835101 (+)
tmem79a LOC106569868 other upstream 403101 30817937 ~ 30822555 (+)
G2316421 NA other upstream 1291166 29922384 ~ 29931480 (+)
G2314987 NA other upstream 2518693 28698740 ~ 28703424 (+)
LOC118946484 jtb other downstream 393612 31617119 ~ 31621139 (+)
LOC110488305 LOC106569913 other downstream 711321 31934883 ~ 31988737 (+)
G2318792 NA other downstream 730060 31953622 ~ 31954513 (+)
G2319921 NA other downstream 1718641 32942203 ~ 32943392 (+)

Expression


Co-expression Network