G2319419 (LOC106569924)


Basic Information

Item Value
gene id G2319419
gene name LOC106569924
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 32459218 ~ 32461907 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2652769
ACAGACTTACATTCTGCTACATCTTTATTTTTAGCTGAAACAACTGTTACATAGAAAATAGGAGACAGAATTCAGGAACTGAACAATTATCTTAGAACGCCAGTGGCACAGAAAGAGGTCAACTCTGTCCAAATATGTCTCTAGGTCAACAACAGACTTGCAAGGCTAGAGTACTAAAGTGTATGTCAATCTATCCCAATCTGCGTCCCAATGCTCCTTCCTTTCATTGCCTCTTTTCCCTCGTGTCAATGAACTTCAAGATGAACAGTTTACATCATATATATGACAGGTAAAAGTAATAAGTAGACCAAGACCTCTTGCATCTGGCCATGAAGGAAAGGAAACTGTTGCAGACCATTGGGACAACACCTTGTATTTACAAGGAGTGAGTCTTTTACCATGACCAAAAACAAACATAttactttttttaaccatttagcAACGTATCGCTACATCAACGGgggaactacagtatattacatggACTATCAGACCATTGTATAGAATAATTGAGTCAGGGGCTATACAGGATTTTTAGCATATTGTTGCATCGGCCACACTTTAGTTTCCCCTGTTACCTATCTTTAGTTTCCCCTGTCTTGAATGGAATAATAGTCAGGCTTCAGTCGTTATGCAGAAagtccaactgctcttaaatgggGGAAATGTGTTGGGATAAATAGGTTCAGTATAAAAACGAGCTTTGACACTTAagagtaaaaaatgtaaaataacatGCATTACTCTATTTAGTTTAATGGGTTGTCTTGAAATTATGTTTGACAATACCCCTGTGCTACAGCTTACACACCACTAACTAAAGTATGGCGTTCGTGAAAAATAGTGGGAAAAATAACGTTTTGGATGTCTACACATTAGGCCATGTCATCTTGTGAAATACTTTAGGTAGTCGCAAAAGTGAATTCTGACTTCATTCAGCTGACGGTGCTGAACACAAGCTAACACAAACTCGACTTTGTAACCTTtccaactcttttttttttttacatttactaaTACGATTAGTTTATTGTGATCGAATGAGTTGTAGTTACCAGTGATCACCACTAGAATAGCTTTCACAGAGTACTAGTATTTTCACAGCAGGACGAGCACTTTTTACGTTTTCCATTTACATTTGCGTATGAATCCTCTGTATGACATTTAGCACAGCATCACTTATATTGAAATAAATGATCAATCTCTCCGTAATGGGAACTTTCTTCTCTAATTATAGAGAAAAACATGAAATTAAAGACATTCTATAGCCACCAATCAATGAGTGCTTCCACTGACACCTGAGTTGCATTCAAGGTAGAAACCTGTGCAACATATTACTATTGACAAATGATGTCACACCCGTTGACAACCACTGAGTAGATTAAGGATTGCAGGTCCTTGTGTCCTTTGTTGACTAAGAAGCTTCCTATTGATAGTGGGATGTATTTAAACGTATTTGTTCTCATTCTTTTTGGAGTCTAATTTATTGGTGTGCAATTAATTGCGGTAGAACATGCACATTTATACATTTGTCATTGGTAATAGAAAATAGCAAATATTTGATCTATTACAGAAAAGTAAAATACCGCTTTCCATTGTGGTTATTTTCTTATGTACTCCTTTTCTGCACACAATCTTACCTTTTGTATGTATTTTTATCTCCAtgaatgtttgttgttgttgctatacCTTCTATGTGTTTTCACAGAAATTATTAATCCTATTCAGTAAAATAAAGTCATTTAAGTTAATTCAGCTCGAAGCCTTTTGGCACCTTTCATGACAATGTACAGGCAAAAGGAGAAAGTACTAAGAGGAGCATCAAACGCAAAACATACAAACGCATCAAAATAtaaatatgtacatacaaataaaaTATTTGATATTTTTCGTCATTTGAAAATAGTCAAAGCAGTTGTCAGTCcgttccctcctcccttcctttcGTGCATATTTTCACGCATCCAGACTTCCACCCTTTTCTTAAACCTATAGGGTGAAGACACTGAGTTACTGTATGTAGGTGATTCAATCTGCTACATTGAGCGGAAGCCCGACCTCGCACTCTCACACTATTCGCGGCGCTGACCGGTCGTTGGACATAGTCTTCTTCAGCTTGACCCCTCGCCGTATGGCCAAGAGCACATCTTCCCCCTCACCGCAGCCAGGCTCCTCCTCCTGAACCTCCGGCAGGGCCTCACGGTCCCACTCTGACAACCTGCTACCAGGCTGAGCATCCCAGGGTGCCTTGGGAGACACCAAGCCGTTGTCCCCCGCTGAAGAGAGTGGGCTCAGCGgtccccctccctcgctctctcctctgaAGAACAACCCGGGGTGCTCGGGAACAGTGGGCGTCTTGACAGGGATCATGGGGGGCTTGATGGGGATGGGGCCCAGACCCAGGCCTCCGGAGGAACGCCGCAGGTTGGGCTTGGAGGAGGGCGTGCGGCGGATGGTAGCCACCCCGGGGGTGACAATACTGCCGGGGGAGGGGGCTGTGGGGGGGATGCCCGCTGTGGAGGCTGGCCGCTTGGCCTGGAACATGCGGCGATAGGACTGGCTGATGTCACTGTTGCGGGGGATGGTGGAGAACTTGTTGAAGTCGGGCTGGTCCGTCTCCTGGTCGCCACCCACGGAGAAGTAGTCATAGTCGG

Function

NR:

description
metastasis suppressor protein 1-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2652769 True 2657 lncRNA 0.43 2 32459218 32461907

Neighbor

gene id symbol gene type direction distance location
LOC110488315 NA coding upstream 146 32453907 ~ 32459072 (+)
LOC118946461 NA coding upstream 60716 32395064 ~ 32398502 (+)
LOC110488310 LOC106570022 coding upstream 70851 32373725 ~ 32388367 (+)
LOC118946466 LOC106570022 coding upstream 82669 32372554 ~ 32376549 (+)
LOC118946529 LOC106569920 coding upstream 86681 32371806 ~ 32372537 (+)
LOC110488320 NA coding downstream 147378 32609285 ~ 32614559 (+)
LOC110488322 LOC106569928 coding downstream 199110 32660576 ~ 32683300 (+)
LOC110489432 col14a1 coding downstream 223780 32685687 ~ 32782036 (+)
LOC110488323 LOC106569930 coding downstream 328446 32790353 ~ 32820390 (+)
LOC110488335 LOC106569945 coding downstream 558714 33020621 ~ 33034414 (+)
G2319381 NA non-coding upstream 66376 32392468 ~ 32392842 (+)
G2319374 NA non-coding upstream 70479 32388538 ~ 32388739 (+)
G2319371 NA non-coding upstream 76893 32381680 ~ 32382325 (+)
G2319432 NA non-coding downstream 16877 32478784 ~ 32479552 (+)
G2319471 NA non-coding downstream 76259 32538166 ~ 32539819 (+)
G2319718 NA non-coding downstream 108755 32570662 ~ 32570919 (+)
G2319723 NA non-coding downstream 111395 32573302 ~ 32573552 (+)
G2319732 NA non-coding downstream 115315 32577222 ~ 32577423 (+)
G2318792 NA other upstream 504705 31953622 ~ 31954513 (+)
LOC110488305 LOC106569913 other upstream 517304 31934883 ~ 31988737 (+)
LOC118946484 jtb other upstream 838081 31617119 ~ 31621139 (+)
LOC110488286 chtop other upstream 1118687 31334757 ~ 31340531 (+)
G2317685 LOC106569887 other upstream 1235656 31222117 ~ 31223562 (+)
G2319921 NA other downstream 480296 32942203 ~ 32943392 (+)
LOC110487593 LOC106570137 other downstream 707556 33166851 ~ 33175323 (+)
G2320160 NA other downstream 989252 33451159 ~ 33451620 (+)
G2321378 LOC106569991 other downstream 1875203 34337110 ~ 34354024 (+)
G2321656 LOC105025880 other downstream 2387271 34849178 ~ 34850391 (+)

Expression


Co-expression Network