G2319471



Basic Information


Item Value
gene id G2319471
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 32538166 ~ 32539819 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU2652823
TGGCAGTATACATATGATTTATTGGTACAAATATGCAGGAGTATTGGCAACCACATTAAAAGGTTTTTGTTACAAagcattgttttttttaatgtatttagcACAAATCAATTTAACCAATTAAACTGGAAACCATCACCAAGTCCCACAATAAATGTATTTCATATAAATCACGATAAATCAAAGTTATATTATGCCTGTCATTAATAAAGGTTTACTAGATCAATGTGCCCGTGGCAcaatgtaacccccccccacacacacacactaccagtcaaaattctggacacacctactcattcaaggggttttctatatttttactattttctacattgtaataataatgaagacatcacaactatgaaataacacatatggaatcatgtggtaaccaaaaagtgttaaacaaatcaaaatatattttatatttgagattcttcaatgtaacCCACCTTTTAccttgacagctttgtacacacttggcattctctcaaccagattcacaaGGTAGTCAAATGGAATGCATTtccaaataacaggtgtgccgtGTTAAAAGGTTGtttgtggaatttccttcttaatgcatttgagccaatcagtgttgtgtcaaggtatacagaagatagccctatttggtaaaagaccaagtccatattatggcaagaacagttcaaataagcaaagagaaattgcagcccatcattactttaagacaagggcagtcaatctggaaaatttcaagaactttgaacgtttcttcaagtgcagttgcaaaaatcatcaagcgctatgatgaaactggctctcatgaggaccgccacaggaaaggaagacccagagttacctgctgcagaggataagttcattagagttaccatcctccgaaattgcagcccaaataaactcTTCACAGAATTCAAGCAAGACAcatcaacattaactgttcagaggagactgcgtgaatcaggccttcatggtccaattgctgcaaagaaacccctactaaaggacaccaatacaaAAAGaaacttgcttgagccaagaaacatgaacaatggacattagaccagtggaaatctgtcctttggtctgatgagtccaaaaatttagatttttggttccaactgctgtgtctttgtgagacgcagagtaggtgaacggatgatctccacatgtgtggttcccatcgtgaagcatgaaggtggtgtgatggtgctttgctggtaacactgttgtgattcatttagaattcaaggcacacttaaccagcatggctaccacagaattctgtaGCGATACACCATCTCATTTGGTTTGCGCTGTGGGACtttcatttgttttccaacaggacaatgacccaacagacctccaggctgtgtaagggttatttgaccaagaacaagagtgatggagtgctgcatcagatgacctggcctccaaaaatcacccaacctcaacccaattgagatcatttgggatgagttggaccgcagagtgaaggaaaagcagtcaacatgttctcagcatatgtgggagctccttcaagactgttggaaaagcattccaggtgaagctggttaggagaatgccaagagtgtgcaaagctgtcatcacggcaaa
>TU2652824
TGGCAGTATACATATGATTTATTGGTACAAATATGCAGGAGTATTGGCAACCACATTAAAAGGTTTTTGTTACAAagcattgttttttttaatgtatttagcACAAATCAATTTAACCAATTAAACTGGAAACCATCACCAAGTCCCACAATAAATGTATTTCATATAAATCACGATAAATCAAAGTTATATTATGCCTGTCATTAATAAAGGTTTACTAGATCAATGTGCCCGTGGCAcaatgtaaccccccccccacacacacacacacacactaccagtcaaaattctggacacacctactcattcaaggggttttctatatttttactattttctacattgtaataataatgaagacatcacaactatgaaataacacatatggaatcatgtggtaaccaaaaagtgttaaacaaatcaaaatatattttatatttgagattcttcaatgtaacCCACCTTTTAccttgacagctttgtacacacttggcattctctcaaccagattcacaaGGTAGTCAAATGGAATGCATTtccaaataacaggtgtgccgtGTTAAAAGGTTGtttgtggaatttccttcttaatgcatttgagccaatcagtgttgtgtcaaggtatacagaagatagccctatttggtaaaagaccaagtccatattatggcaagaacagttcaaataagcaaagagaaattgcagcccatcattactttaagacaagggcagtcaatctggaaaatttcaagaactttgaacgtttcttcaagtgcagttgcaaaaatcatcaagcgctatgatgaaactggctctcatgaggaccgccacaggaaaggaagacccagagttacctgctgcagaggataagttcattagagttaccatcctccgaaattgcagcccaaataaactcTTCACAGAATTCAAGCAAGACAcatcaacattaactgttcagaggagactgcgtgaatcaggccttcatggtccaattgctgcaaagaaacccctactaaaggacaccaatacaaAAAGaaacttgcttgagccaagaaacatgaacaatggacattagaccagtggaaatctgtcctttggtctgatgagtccaaaaatttagatttttggttccaactgctgtgtctttgtgagacgcagagtaggtgaacggatgatctccacatgtgtggttcccatcgtgaagcatgaaggtggtgtgatggtgctttgctggtaacactgttgtgattcatttagaattcaaggcacacttaaccagcatggctaccacagaattctgtaGCGATACACCATCTCATTTGGTTTGCGCTGTGGGACtttcatttgttttccaacaggacaatgacccaacagacctccaggctgtgtaagggttatttgaccaagaacaagagtgatggagtgctgcatcagatgacctggcctccaaaaatcacccaacctcaacccaattgagatcatttgggatgagttggaccgcagagtgaaggaaaagcagtcaacatgttctcagcatatgtgggagctccttcaagactgttggaaaagcattccaggtgaagctggttaggagaatgccaagagtgtgcaaagctgtcatcacggcaaa

Function


NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU2652823 False 1623 lncRNA 0.40 2 32538166 32539819
TU2652824 True 1630 lncRNA 0.40 2 32538166 32539819

Neighbor


gene id symbol gene type direction distance location
LOC110488315 NA coding upstream 79094 32453907 ~ 32459072 (+)
LOC118946461 NA coding upstream 139664 32395064 ~ 32398502 (+)
LOC110488310 LOC106570022 coding upstream 149799 32373725 ~ 32388367 (+)
LOC118946466 LOC106570022 coding upstream 161617 32372554 ~ 32376549 (+)
LOC118946529 LOC106569920 coding upstream 165629 32371806 ~ 32372537 (+)
LOC110488320 NA coding downstream 69466 32609285 ~ 32614559 (+)
LOC110488322 LOC106569928 coding downstream 121198 32660576 ~ 32683300 (+)
LOC110489432 col14a1 coding downstream 145868 32685687 ~ 32782036 (+)
LOC110488323 LOC106569930 coding downstream 250534 32790353 ~ 32820390 (+)
LOC110488335 LOC106569945 coding downstream 480802 33020621 ~ 33034414 (+)
G2319432 NA non-coding upstream 58614 32478784 ~ 32479552 (+)
G2319419 LOC106569924 non-coding upstream 76259 32459218 ~ 32461907 (+)
G2319381 NA non-coding upstream 145324 32392468 ~ 32392842 (+)
G2319374 NA non-coding upstream 149427 32388538 ~ 32388739 (+)
G2319718 NA non-coding downstream 30843 32570662 ~ 32570919 (+)
G2319723 NA non-coding downstream 33483 32573302 ~ 32573552 (+)
G2319732 NA non-coding downstream 37403 32577222 ~ 32577423 (+)
G2319739 NA non-coding downstream 44244 32584063 ~ 32584294 (+)
G2319745 NA non-coding downstream 48294 32588113 ~ 32588314 (+)
G2318792 NA other upstream 583653 31953622 ~ 31954513 (+)
LOC110488305 LOC106569913 other upstream 596252 31934883 ~ 31988737 (+)
LOC118946484 jtb other upstream 917029 31617119 ~ 31621139 (+)
LOC110488286 chtop other upstream 1197635 31334757 ~ 31340531 (+)
G2317685 LOC106569887 other upstream 1314604 31222117 ~ 31223562 (+)
G2319921 NA other downstream 402384 32942203 ~ 32943392 (+)
LOC110487593 LOC106570137 other downstream 629644 33166851 ~ 33175323 (+)
G2320160 NA other downstream 911340 33451159 ~ 33451620 (+)
G2321378 LOC106569991 other downstream 1797291 34337110 ~ 34354024 (+)
G2321656 LOC105025880 other downstream 2309359 34849178 ~ 34850391 (+)

Expression



Co-expression Network