G2319782 (LOC100380685)


Basic Information

Item Value
gene id G2319782
gene name LOC100380685
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 32634427 ~ 32648468 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2653194
CTTGCAGCTCTCGTCGTTGTCTGAGCGGTGGGGTAGGAGGAAGGAGAAGACATTGAGGGGGCCGTCACACACCCCGGCCGTCTGGTTGACATCCTGACAGCTGGTGATCACTACATAGTAGTGTGTAGGGACTGGAGCCGAGACTGCGGCGTATCTGGGGGTCTCTTTGATCTTCACGGTGGTGTCCCGGAGGCCATCATAGTTGTTGTCAAAGATGGGACCGGTGACCACATTGATGCCGTTATTCTCCTCTGCGTAGCGCTTGAGAAGAGTCCCCTGGAGGTAGCTCCATATTTCTGCAGAGTTGAAGGGAAAAGAGAAAAAGGTACAAGCAAATGTGGTTTTGTTTTGGTACAGCAAAACAAATAACCAAAACAAATGCTTTCTAACATTGTCTGTAAAACACCTGTTGCATGAATGCATTTGGGACGTTATAAGGACTCATGAACTGAAATGAATTCTTATAGCCAGCCTTGAAAAATACTCTCTAGACTGCATCTGAGTATAGCGTTTTGTGAATACATGTTATTAATGTGGTCTCACACCATTTAAATTATAGCAGGGCACCTTGTAAGCATTTCAAAAGCCAAAGTCTGGTTTATTTTGGATGCACATTCCTTCAAGAAGAAGTGATGCCCTGCTCTAAAAGTACCCAGACAAGGGAACTGCTCTTCACATCCATCTCTACAATCATTCACCACACCAGGCTTCACTGAggctctctctttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgcaagcccgtgtgtgtgcgtgagtgcgtgtgtgagtgagtgagtgcgtgggTGGGTACTGGACGTCTCTCTCCAGTGAGAGGACAATGGGTGTCAGCCTGTCCCTTCTCTCCCAGACCTGAGGTCATCAGACTAGCCTccctcctcactccccctcctacctctccctccaCACATTAGCATGGCCAGTCCATGCAAAGATACAGCACAACACTCACAGAGGGCCACATGTACTATAAACTATGTGATTGGTAACTGTAATAGCTTTGGAGGGAAGCATCTACCAGAGAAAAACTAATATTGAGAAACAAGGATCTCCTTAGAGAACCGATAACAACAACCTGCTTAACAAAACACAGTGGCAGATTTATAAAGCATTCGAACCAGCATTTTCAAATGGGTTGGaaatatacaaataaaaatgtaatatgtaaatataaataaatgaatacTCACTTTTGAATGCAGGGTACATGGGAACGGTGTTTGTGATCAGTGATGCATCATATTTTGATTCAGGAGACAGGGCCAGCTCTAGCATAAAACATGTAAATATATACTTTAATTTACCTCCCATTTAGGCCTGGAAAAAAGCCTGCACACCACCAAGACCAGGGTCATCTTCATTAGGTACCAAACTGAGTGAAACAGGAGATACtgtctgaacttgtccaataacatACGTTTGTTTTTATTATgcattgcaaaacgttttgcttcAGTGTGccttaatgaacatgacccagggtgGACTAGTGTGCAACTCACCTGGTGGATAGAGGAAGCCATAGGAGACGTCTGTATCCTGGCTGTAGGTGGTGCAGGCCTGGCTGTGTTCAGGAGGAACCCGCAGGTctgctctcacacactcactcactggctCAGGCTCAGGGAGGGGTGTGACTTCTTCCTGGAAGGGAACATGTTGTCATTGGTAACACATTGTGAAATCCCATCGTAAAATGAGATAGAAATTGCAAACACCCATTGTTTACAAACACCCAATACAGTGTTTCTGTATGTGATTGGGGCCATTAGTTGATTTGTGTGCTGTATCGTTTCTAAATCTGTATAGGGTTCTGTTAGGTTAGTGTTACGCAAGTCCCTATCCAGGCTCTCTCCCCCCAATAAATCAAAACCAGGCTCATTCTTATACAAAATGCAATTAACCAGTTGAGTCAAAGACCAAAATTACATTTACGATCTCCTAACAGGACTACTAATTGTTTTCATGCATGCTACTCACTGCAACCATTCAAGTAAACAGATACATTTCAA

Function

NR:

description
Ectonucleotide pyrophosphatase/phosphodiesterase family member 2 precursor, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2653194 True 2051 lncRNA 0.44 2 32634427 32648468

Neighbor

gene id symbol gene type direction distance location
LOC110488320 NA coding upstream 20243 32609285 ~ 32614559 (+)
LOC110488315 NA coding upstream 175355 32453907 ~ 32459072 (+)
LOC118946461 NA coding upstream 235925 32395064 ~ 32398502 (+)
LOC110488310 LOC106570022 coding upstream 246060 32373725 ~ 32388367 (+)
LOC118946466 LOC106570022 coding upstream 257878 32372554 ~ 32376549 (+)
LOC110488322 LOC106569928 coding downstream 12549 32660576 ~ 32683300 (+)
LOC110489432 col14a1 coding downstream 37219 32685687 ~ 32782036 (+)
LOC110488323 LOC106569930 coding downstream 141885 32790353 ~ 32820390 (+)
LOC110488335 LOC106569945 coding downstream 372153 33020621 ~ 33034414 (+)
LOC100136003 LOC100194553 coding downstream 393914 33042382 ~ 33051361 (+)
G2319745 NA non-coding upstream 46113 32588113 ~ 32588314 (+)
G2319739 NA non-coding upstream 50133 32584063 ~ 32584294 (+)
G2319732 NA non-coding upstream 57004 32577222 ~ 32577423 (+)
G2319723 NA non-coding upstream 60875 32573302 ~ 32573552 (+)
G2319838 NA non-coding downstream 140318 32788786 ~ 32789033 (+)
G2319840 NA non-coding downstream 172054 32820522 ~ 32820657 (+)
G2318792 NA other upstream 679914 31953622 ~ 31954513 (+)
LOC110488305 LOC106569913 other upstream 692513 31934883 ~ 31988737 (+)
LOC118946484 jtb other upstream 1013290 31617119 ~ 31621139 (+)
LOC110488286 chtop other upstream 1293896 31334757 ~ 31340531 (+)
G2317685 LOC106569887 other upstream 1410865 31222117 ~ 31223562 (+)
G2319921 NA other downstream 293735 32942203 ~ 32943392 (+)
LOC110487593 LOC106570137 other downstream 520995 33166851 ~ 33175323 (+)
G2320160 NA other downstream 802691 33451159 ~ 33451620 (+)
G2321378 LOC106569991 other downstream 1688642 34337110 ~ 34354024 (+)
G2321656 LOC105025880 other downstream 2200710 34849178 ~ 34850391 (+)

Expression


Co-expression Network