G2321096 (LOC106570138)


Basic Information

Item Value
gene id G2321096
gene name LOC106570138
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 33868234 ~ 33873514 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2654695
GTGACCTCACCCATGACATCATCGTCCCCCTCTTCCTCACAGATAACCATGCGCTCCTCGTCGCTGGTCACGTCCTCGCTGGCCCCACACTGTGCCAGGGAGAGAGTAGGGGGGTGGCTGTGGAACGAGCCGGTCTCTTCTAGGCACAACTTCTCCACATCTCTGGCCCGCTCCCTCCTCTCCAGGCTGTGTACAGCACTATAGGAGAAGGCACGGGTGCGAGGGAGCTGGCCACTGTAGTCCCCCACATGATGCTCAGAACCCCCAGGCCAGCCTGGGCCTGCCGTACCCTTCAACTCCATGCCCTGAGACACTGACTCGGGCTctgcgCTCTCCGACATGCTCCTCTCGCGTGCCTCTTTGGCCCCCGGGGTCCCTCGGCCCTCAGAGATAGACTTCCTCCTGTCCTTGTTGCACCACTTCCAGTCTGGGTGGGCCCTGAAGTGAGCCTCCTTCACCTGGAAGGCGAGGTCGTGGTACTTCTGCTTCTCTTGTGGCCCCAGGGCGTACCACCACTCTCCCAGGATCTTGCTGACCGTGCGGTTGTCCTGGTTGGGGTGCCTCTGGTGCACCAGCGCCCGGTGACGCTTGCTAAAGATCATGAACGCGTTCATTGGCCGCCGAATGTGGTCCTTTTCCCtCTTTCTGTCTCCATCTTTTGGAAGAGAACTGAGGGACTGAGTCCGCCTCTTCATAGTGCCTGTAGACGGGGCAGGATCATTTGC

Function

NR:

description
protein capicua homolog isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2654695 True 725 lncRNA 0.60 5 33868234 33873514

Neighbor

gene id symbol gene type direction distance location
LOC110488361 LOC106569969 coding downstream 338983 33517551 ~ 33529251 (-)
LOC110488358 LOC106569966 coding downstream 373327 33489584 ~ 33494907 (-)
LOC110488357 LOC106569964 coding downstream 379768 33479769 ~ 33488466 (-)
LOC110488354 NA coding downstream 420472 33436455 ~ 33447762 (-)
LOC110488353 NA coding downstream 442772 33413400 ~ 33425462 (-)
LOC118946458 NA coding upstream 54141 33927655 ~ 33939393 (-)
LOC110488376 enog coding upstream 274896 34148410 ~ 34172660 (-)
LOC110489333 NA coding upstream 381101 34254615 ~ 34255550 (-)
LOC110512058 LOC106570022 coding upstream 383950 34257464 ~ 34262009 (-)
LOC110489327 LOC106570163 coding upstream 420674 34294188 ~ 34302804 (-)
G2321074 NA non-coding downstream 23253 33844682 ~ 33844981 (-)
G2320998 LOC105028600 non-coding downstream 171144 33696139 ~ 33697090 (-)
G2320879 NA non-coding downstream 378710 33489273 ~ 33489524 (-)
G2320862 NA non-coding downstream 415209 33452718 ~ 33453025 (-)
G2321100 LOC106570138 non-coding upstream 12409 33885923 ~ 33888473 (-)
G2321088 NA non-coding upstream 35114 33908628 ~ 33911790 (-)
G2321113 NA non-coding upstream 39310 33912824 ~ 33913063 (-)
G2321116 NA non-coding upstream 42711 33916225 ~ 33916568 (-)
G2321119 NA non-coding upstream 45508 33919022 ~ 33919226 (-)
G2320761 NA other downstream 455732 33410499 ~ 33412502 (-)
G2320755 onmy-uea other downstream 473142 33363312 ~ 33395092 (-)
G2320623 NA other downstream 918296 32917502 ~ 32949938 (-)
G2322234 NA other upstream 487569 34361083 ~ 34361388 (-)
LOC110489328 LOC105025867 other upstream 625512 34499026 ~ 34506457 (-)
LOC110487602 LOC106570003 other upstream 792305 34662296 ~ 34715706 (-)
G2322701 LOC106588461 other upstream 1311370 35184884 ~ 35192129 (-)
LOC110489319 LOC106570022 other upstream 1479274 35352788 ~ 35356932 (-)

Expression


Co-expression Network