G2321632


Basic Information

Item Value
gene id G2321632
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 34789371 ~ 34792949 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2655297
AGTACGATTCTACAAATGCGAGAATTGACCAATAACCAAAATAAGGGTTGCACGCTTGTAAGAGCTTCACTTAATATTCTTGGAAACAGACATGGGGATAATGTATTAGATGAATCCCTATACATTTTTCTGAGGTATGCCAAATTACTTGGGGGATACAATGTAGCCCCGCCTCCTCCTCACCCCGCAATACAATTAGGGGCCAATGAAGCTGTCTCGTGCTTACTCACACCTCCTTCCATCTAAAAAACCTCACGCCACTATCTGTCGCCCCACGagccacacacaaaaacaaacattttatacCACAACCTCCCTCttacctccacacacacacacacacacattaatcaaCAGTACATTTACAGGCACACAGATTAATGAGGACGTACTCAACTAAAACATAATCACAACATCAGTATACCtccaaatgtacaaaaaaaacatacattgaaAATATAATTGAATCTTCGTGTGACATAAATATATTTAGCCTTTCTTCATTTTAGTTTAACAAGATTCTAGTTATGGAATCTGACGTTTCCTCTCTGTAAAAATCATCGGGCCATTCTAGTCCTATAACTGGTTATCCATAATCATGTCAAACAACAAGGCAAGCCACAATACATTCTCCAAACTATTCTAGCAAAATCCTCATTCTTTACAATAAAGAGTAAAGTTCTTGAAAAGAGTGACATTCCGGTTACATAAATGTAATCTTGTAACGAAATGCACACATTTTTTACCAAAAATGTTAACAATGTAATTTTATAGCTTTTGCTCTACAACTTGAAATTTGagaaacattttttgttgttgttacatttGCTTTGGTGAATGTAGCTTAATTAACAAGGAAAGCTGTGATGCATGTCCTTTGCGATATTAGGCTTTTGAATCCAAAAAGCCAATATGAATAATGAGATCATAGCCTTGGGTTTTAAATAGTTTGTGGATTTTTTGAAAAACACAATTGTCTTACTTGTAATATCCCAAGTCAGATCAAATGTGAGATTCATCATTCCTGAAAAGACATTGAAATACACACACGGCAAATACAGACGCATGTACATTAGACATACACGCCATGACGTCGTCGTAAGTCAGCACTATGACATCATCAACACTGGCTTTGACATCTTCATGCGGTTTCTCTTTTCACTTTGATTGCATCGGGCTTTTTTTCCATCAAGAACACAAAGGTTAAAATCCACTAGGAAGTTCAATATTCAAAATCCAGGAAACATTGAGCTTCACAGAGAATAAAAAAAATCAATAGGGGTAACTAATAATCATGGTGATAATAATAATCAGAGTAAATCTATAGTAAACATAATCATGactataaacacacaaacacatatcatAGTTTTAAAAACGTTGTCTGAAAGTTCCATCAATCAATTTTTGTCTTTATCCATTCACAGTTAAAGGGGAGAGCCGAAATACTATACAAAGATTTGAATAAATACAATGATCTCCTTGTCCTTTCAATCAAAGTGGAGAGTCCAACCCTTTTAAAAATGGACAGTAACAACCACATCTTCCATCTTTTAACCAGATAactgtgaaacacacacacaaataagaaTGTtacaaatgtttgcaaatgtacaaaaatatGACATGTCCACCTCCACCCCTGCAATGTAAAAAATGATGGTATGATTGGCTTTTtgtcacactcaatgtcaacctCACAAGGGCACAAAGTAGCTTTGCAGAATTGACTCTGTTTTCTTCACACTTACAAAATATGTCTGTCATTTCTGCAGTGTTGCACAAACTGTCTCCAATATTGACACAGACAAATTAAAAAGCCAACAAAGTACAgaccacagacacacaaagagttTTCAGAATAGCCCTTGGTGTTAAGCGTCCATTGTTCCCTGTTCCCCCTTTCCAACCTGTCTCCAAATATTGTGAACAGCTGGAGTTTCAGAAACAGAAATAATATGTGGAATTCAGAGAAGACTGTGAGTAGTGTATATGAACTACTGACAAATCAATTTATTACCTCACAATCTGTGGTAAACAGCTCAGAAAGTATCATCAATGGAGCAGGAGCTTGACTGGTTTTGGGGATTGTTTTAAGGGACAGACCCATGGGCAAGTATGGCTAAACAAAGCCTTTGCATTAGCCACTCTGTATGGCAGTGTCCCTCAAATTTAACACAACTTCACTGAGCTTTCATTCTCATCTTATGTGATCAACAGATTTGTCATCTTTTTTTTATTTCGGGTGGTCTTTATCTCCTTAAAAACAATGACTGACATTGTGTGTCGAATAACACCGTCACATCGACCAGCCAGCCAATCAGGCGAGGGTGCAAAGGTGATTCAGCAAAGTGATGTTTgtgtcaaatcattataataataaCTGAGAAAATCCAGCCATAATCAAGAGATTAACTTATACATGACCTTATACAAAATGTCTGCAGACTAAGTTATGGCTGTAGTGTTAGATTGTGGTATCTAGCAACAGTACTCCAAATCTGCCTATTGTCAAGTCTTCCAATCAAAATTAGGAAAGTGACGATTGGCAACTCAAATGTCCACTCAgtgtcagtcattcagtcatcaGGCTATAAGCATATACACACAGAATATACATACTGTCCAACGGGGATTTATTCTTTTACAAATTAAAACAAAATTATTTACAGTCTTGTCTTTTTTACAAAAGTCAAACAACCATCACATTGTTCTGTACTCCATTGACATCTGTGTCTGTTCAGATTCAAAGACAGGTTTGTTGTCTCTGTCAGAGCAGCTAGAGGTTTCACAACAAGAAACTCAATAACCATTTCATCATTTTGCAGGATCCACAAGTAAAAGCCATCATGTCCTAGGATCCTTTTTCAATTGCACAACAAACTTTTTTAAATTGTTCATTTTTTGCTCTATACATGGCcatttttctttctccctcctcaaCAATATGGTTGAAAATTCTCTTTCCCAGGAATCAAATCAATGGGCTTCATTCAAACTTCTCTCTAATAATTCAATTTTTCTCAATGGTTTCTTCCTATCATTGCCCTTTTCTGTGTTTCCTAGCAACAGGTAACAATGGCATCCACTCTTCTCTCACGTCTTTCCTTCTCTGGTCTTCAACACACTCATCTGAGGCGGTTGATGGGACGCACTGTCCTCGTCatatccttcactctctctcatcaGCTTGCCCATGTCTCTCTTCTTGTTTCTCCTTCTATTCACCTTTCTCTCCATCATGCCCCAATTGACCTTTCCTTATTCTCTTCTTTCTGTGTGAACACTTTCAGCTCGAACATTCTCAACGCGACCTTCATCACTCCTTCTCCGTTGTCTCTACTCTCTCACACCGTCACCTCGTTCTTACTAGCCGTTCTCAATGTCtggccccctccccctcctcctcccccagggaTGTATTGGAGCTGTTCAATGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2655297 True 3440 lncRNA 0.38 2 34789371 34792949

Neighbor

gene id symbol gene type direction distance location
LOC110489308 LOC106570000 coding upstream 221746 34522254 ~ 34567625 (+)
LOC110489290 LOC106569995 coding upstream 326875 34444152 ~ 34462496 (+)
LOC110489288 f131b coding upstream 393962 34374118 ~ 34395409 (+)
LOC110489266 LOC106569989 coding upstream 503125 34273307 ~ 34286246 (+)
LOC110487599 LOC106569987 coding upstream 557518 34206176 ~ 34231853 (+)
LOC110489311 LOC106570010 coding downstream 95937 34888886 ~ 34894719 (+)
LOC110489298 LOC106570012 coding downstream 145146 34938095 ~ 34941903 (+)
LOC110489330 LOC104962755 coding downstream 167788 34960737 ~ 34966594 (+)
LOC110489302 LOC106570022 coding downstream 176120 34969069 ~ 34972560 (+)
LOC110489317 LOC106570014 coding downstream 188781 34981730 ~ 34988181 (+)
G2321625 NA non-coding upstream 9463 34772718 ~ 34779908 (+)
G2321615 NA non-coding upstream 42894 34741587 ~ 34746477 (+)
G2321609 NA non-coding upstream 59057 34730017 ~ 34730314 (+)
G2321568 LOC106570003 non-coding upstream 122367 34665737 ~ 34667004 (+)
G2321567 LOC106570003 non-coding upstream 123728 34662353 ~ 34665643 (+)
G2321638 NA non-coding downstream 15756 34808705 ~ 34808992 (+)
G2321650 NA non-coding downstream 36314 34829263 ~ 34829547 (+)
G2321804 NA non-coding downstream 186634 34979583 ~ 34979802 (+)
G2321788 NA non-coding downstream 188076 34981025 ~ 34981617 (+)
G2321378 LOC106569991 other upstream 450174 34337110 ~ 34354024 (+)
G2320160 NA other upstream 1337751 33451159 ~ 33451620 (+)
LOC110487593 LOC106570137 other upstream 1619254 33166851 ~ 33175323 (+)
G2319921 NA other upstream 1845979 32942203 ~ 32943392 (+)
G2318792 NA other upstream 2834858 31953622 ~ 31954513 (+)
G2321656 LOC105025880 other downstream 56229 34849178 ~ 34850391 (+)
LOC110487604 LOC106570016 other downstream 480190 35025996 ~ 35277684 (+)
LOC110489253 LOC106597474 other downstream 648085 35441034 ~ 35521453 (+)
G2321738 LOC106597474 other downstream 698182 35491131 ~ 35498127 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G174201 NA non-coding CI01000036 null 1711530 ~ 1711763 (+)
grasscarp (Ctenopharyngodon idella) CI01000321_03795430_03804685 SHISA7B, SHISA7 misc CI01000321 null 3792915 ~ 3805511 (+)
tiger barb (Puntius tetrazona) G133948 LOC107693373,LOC107724108,LOC107739520,LOC107599537 unknown NC_056717.1 CM032086.1 17330697 ~ 17334234 (-)