G2321733 (LOC106570021)


Basic Information

Item Value
gene id G2321733
gene name LOC106570021
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 35425707 ~ 35436132 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2655431
TGGAGAGAACCAACTGAAGTCTTTATTGTAAAGTTACATGTTTTTACTTCAAATCTTAAATGGCACAAAACACAGCCATTGAAAGGTGAGAAAAGTTGACATTTATCACCATTTACGACACGAGTCACAGAGCATGATACAACTGGAAAGAAAGTTATACATAGGTGAGATAGCGCTATGATCACTGAGGGTGACCAAAGTATTAATTTCACACTACTCCAAATACAAaatcaaaaaaagaaaaaacctAACTTGCCATAAAAATGAATGAGTCTTCAGGCTAAAATGCAAGAACACTTTCAACTTAAATACAACAATTATGACTCAATGTGAAGATGTTCAGAGAATCTACACAAAAACGCTGCTATGAATGACACTGAACAGATTTAAAAGCGGGGCTTCTTGGCAGGCCCATCAAACTCCTCACGGACCCTGCCAAACCCTTGGTTGTTAGGACCCAGTCCCCCCCGGCCTCCCTGAGGGAAGTTTCGCTCATTTCGCATTTCGTTGGGCATCATGGCTCCCCCAGTGCTGGGTCCCCCCATGCCTTGGTGTCCCATGGGGAACTTCTGGTTGGGTGAGCCAAATTGATTGTCAGCCATGCCCATGGTGCCACCCTGAGTCATTCTCATATCCCTATTGTCCATGAAGTTGCCACTCCTGTAGGCCTCCTCACGCTTGCGGCGCATTTGCTCCTCAATCTCCCTCTGGCGAAGCATCTCTTCCTCGCGTATGCGACGCTCCTCCTCCTGCCTGAGCTGCATCTCTTTCCTCTTCTGCATCTCTGCACTGTGCATCTCTTCCATGCGCCGTAGTTCCTCCTCCCGCCTCAGCAGATCTTGGCGGATCATGTTGGCCTGGTGCACATGGAACGCAtcgtccatctctccctccagttTCTCACGGGCTTCGCGAATGTTCTTCTCCACCTGCTGCCGCTGCTGCTTCTCCATGTCATCCAGGGACTTCCAGCGCTTAGAGTATTCAAACTCAAATGTGCCAGGACGGGCAAACCTGGGCGGTTCCTCCCGCTCCTTATGATAGTTGTGGTTCTTCTGTGCCAGTTTCTCTGGTAGACCATCCTCATCATCATATTGTTCAAGAGGCTCAACGACAATTGGACGAGGTGACGTGGTGAGCAAGAAGACGCCATCGTTGCAACGATCCAGGGCCTTTCGTGCAGCAGGCTTAGAGGCAAATTCAACAATGCCCTTGCCAGTGGAACGCCCGCGATCATCTACAATTACCACAGCTCTCTCTACCACTCCAAACTGGGAGAAGGCCTCCTCCAGTAGCTCATTGGAAACGAAAGGTGACAAGTTCTTCACAGACAGTGCAGCAGAGTGAGTTGCGAAGCGCACCCGAAGAGGTCTGCCTTTCATGGGCACATCATCCAGTTCAGCTTTAGCTATCTCAGCCAATGCACGGGATTCCAGGCGTATGAAGCCAAAGCCTTTGTTTTTGTTGATGAAAATCTCACTGGGCTCGCCATACTTCGCAAACAGCTTCTTGAACGTGTCATCTGAGATATCATTGGGAAGGTTGCCAATGAAAAGGCGGCATCGTTGAGTGTATGTCTTCTCGCCAGGTCTGCGCAGCGATGACAACGTCGCTCTcaactcCTTGGGGTGCTGGGCTTCCTCGGCCTCCATTTGAGTATTCTGAGTTTGAGGTTCAGGTTTTTTGTTAAAGGGTGCAGATTTATGCCCATTTCCATTGGCGTTGCCTGGTCTTTGCTGGTTCCTATTCATTTGGTTTGGTGGGGGAGATGAAAGTGCTGGTTTCTTCATTTGGTTTGGTGGGGGAGATGAGATTGCGGGTTTCGGAGGAACAGGCTTCGGAGGTGGGGACTGCATTTTTGGTTGACCTATCGGCGCTGCTGCTGCGGCTGCTGGAGGTGTAGCTGCGGCTTTCGGGGGTGCTGCTGCGGCTTTCGGGGGTGCTGCTGCGGCTTTCGGAGGTGCTGTTGCAACAGCCGGAGGTGCGGCTACAGGTGCTGCAGTCGCTGGAGTTGTTGCTGTAGGCGCCGGAGGTGCTGCTACGGTCGCCGGAGGTGCTGCTGCGGCCGCGGCCTGCTGTTGCTGTACGGGGCCCTTCATGGTTAGCGCAGGGCCAGGAGTAGGTGGTGGCCGAATCGGTTGAGCGCCTGGCTGGGAAATAGTAGGTGGCATAGGCTTCTGAGGGGTCATCGGACGTATCTGGTTGGGTGGTTTTCCAAAGTTACCGGGATGAGGCCCTCGTTGAAAGGGGTGTTGGTTTTGTCTGAAATTATTCAGGTTACCCATTCCACCTCGCATCGGACCACCAGGCCCAGCTCCCCGGCGTTGAAATCCAGCTCCACGGTTATTTCCTCTAACGTTAATGTTAAATCTGTCCCGAGACATTTCAACGTTGTAGGATCACTGGATAAAATATGTAATATATCGTTAAGCGTAAACAAAGCGTTTAAGTATGTAGCTAACTAACTGCTTTTGTTCCGAACAGCTCTCCTTCTTTTCTAAAATGGCGATTCAAAAACATC

Function

NR:

description
splicing factor, proline- and glutamine-rich-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2655431 True 2521 lncRNA 0.51 10 35425707 35436132

Neighbor

gene id symbol gene type direction distance location
LOC110489282 LOC106588459 coding upstream 130509 35281588 ~ 35302970 (+)
LOC110487604 LOC106570016 coding upstream 148023 35025996 ~ 35277684 (+)
ndus5 ndus5 coding upstream 401580 35018461 ~ 35024127 (+)
LOC110489267 LOC106570013 coding upstream 412029 34988473 ~ 35013678 (+)
LOC110489317 LOC106570014 coding upstream 437526 34981730 ~ 34988181 (+)
LOC110489254 LOC106595653 coding downstream 22420 35458552 ~ 35488169 (+)
LOC118936453 LOC106595653 coding downstream 51777 35487909 ~ 35492518 (+)
LOC110489253 LOC106597474 coding downstream 56173 35441034 ~ 35521453 (+)
LOC110489268 LOC106570027 coding downstream 122428 35558560 ~ 35568391 (+)
LOC110489299 LOC106570032 coding downstream 202080 35638212 ~ 35643788 (+)
G2321793 NA non-coding upstream 65554 35359655 ~ 35360153 (+)
G2321762 NA non-coding upstream 79586 35337839 ~ 35346121 (+)
G2321963 NA non-coding upstream 85980 35323963 ~ 35339727 (+)
G2321758 NA non-coding upstream 94888 35321090 ~ 35330819 (+)
G2321764 NA non-coding upstream 103137 35312039 ~ 35322570 (+)
G2321777 NA non-coding downstream 98934 35535066 ~ 35535838 (+)
G2321998 NA non-coding downstream 100289 35536421 ~ 35536976 (+)
G2321999 NA non-coding downstream 101013 35537145 ~ 35538895 (+)
G2321748 LOC106570028 non-coding downstream 133662 35569794 ~ 35572138 (+)
G2322019 NA non-coding downstream 136352 35572484 ~ 35572742 (+)
LOC110489302 LOC106570022 other upstream 455081 34969069 ~ 34972560 (+)
G2321656 LOC105025880 other upstream 575316 34849178 ~ 34850391 (+)
G2321378 LOC106569991 other upstream 1086510 34337110 ~ 34354024 (+)
G2320160 NA other upstream 1974087 33451159 ~ 33451620 (+)
G2321738 LOC106597474 other downstream 54999 35491131 ~ 35498127 (+)
G2321721 LOC106588478 other downstream 150455 35586587 ~ 35594913 (+)
LOC110511601 LOC106570043 other downstream 856646 36285727 ~ 36298893 (+)
G2323520 NA other downstream 892272 36328404 ~ 36408978 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00011123 sfpq,LOC107558579,LOC107706594 coding CM030133.1 CM030133.1 11907461 ~ 11917021 (-)