G2321721 (LOC106588478)


Basic Information

Item Value
gene id G2321721
gene name LOC106588478
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 35586587 ~ 35594913 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2655405
CCAGAAGTGTCCTATACAGTTATGGGAACCCCCACGTAACACGTAACCCATAATCGTCATCATTAGGCGTTCGTGTGTGACTCACCAAGGGGAGGGTAGGCGGCAAAGCTCTCCACACACATGGGCTTTCCTGGCACCATGACAATGATGGCGGCGTCTCCAGATTTCAGGGCTTTGGGGTTGTCCTCAAGCTTCTTGCCGGAACGACGGTCGATCTTCTCCTTGAGCTCGCTGAACTTGCAGGCGATGTGAGCGGTGTGGCAATCCAGCACGGGGGCATAGCCCTGGGAGATGGTGCCGGGGTGGTTCAGGATGACCTGAGCGGTGAAGTTGCCGGCCTCCATTGGGGGGTCATTCTTGCTGTCTCCAGCCACGTTGCCACGACGGATATCCTTGACGGACACGTTCTTGACGTTGAATCCAACATTGTCACCGGGTAGAGCCGCTTCCAGGGTCTCGTGGTGCATCTCCACAGACTTCACCTCAGTGGTGACATTAGCGGGGGCGAAGGTGCCGGCCTCCATTGGGGGGTCGTTTTTGCTGTCTCCAGCCACGTTGCCACGACGGATATCCTTGACGGACACGTTCTTGACGTTGAAGCCAACATTGTCACCAGGCATGGCCGATTCCAGGGTCTCGTGGTGCATCTCCACAGACTTCACCTCAGTGGTGACATTAGCGGGGGCGAAGGTGACGATCATACCGGCCTTCAGGGTGCCAGTCTCCACACGGCCCACGGGTACTGTTCCAATACCTGATGGGAAACCAGGGGAGAATAGATTAACGATCAAGAGCAGAAGCAAATACAGCCTATATACAATCATGAAGTCTAGGACTGGTTCTTACCGCCGATTTTGTAGACATCCTGGAGGGGCAGACGAAGGGGCTTGTCTGTGGGGCGGGAGGGGGGCAGGATTGAGTCCAGGGCCTCCAGCAGAGTCACACCGTTGGCGTTACCATCCTTACGTTCGACCTTCCATCCCTTGAACCAGCCCATCTAGAATAGGAGAATTTCTGTTTATGTACAAAGCATGACATAATACGCAAGTGACGGGGTGAGACTTTCAATGTAGTAGAATGCACTGAGGATAGGCTACTCACATTGGCACTGGCTTCCAGCATGTTGTCCCCATGCCAACCAGAGATGGGCACAAAAGCGACAGTGGCAGGGTTGTAGCCAATCTTCTTGATGTAGGTGGTGACCTCCTTCTGGATCTCCTCAAACCGCTTCTGGCTGTAGGGGGGCTCAGTAGAGTCCATCTTGTTGACGCCAACAATGAGCTGTTTCACTCCCAGAGTGTAGGCGAGGAGAGCGTGCTCACGGGTCTGGCCGTTCTTGGAGATACCAGCCTCAAACTCACCCACACCACCAGCAACAACCAGCACAGCGCAAtcagcctGAGGTACCAGTGATCATGTTCTTGATGAAATCTCTGTGTCCAGGGGCATCAATGATTGTGACGTAGTACCTGCCGGTCTCAAACTTCCACAGAGAAATGTCAATGGTGATACCACGCTCCCTCTCAGCCTTCAGCTTGTCCAGCACCCAGGCATACTTGAAAGAGCCCTTGCCCATCTCAGCTGCTTCCTTCTCGAACTTTTCAATGGTTCTCTTGTCAATGCCTCCGCACTTGTAGATCAGATGGCCTGTGGTGGTTGACTTGCCGGAGTCGACATGGCCAATGACCACGATGTTAATGTGGATCTTTTCCTTTCCCATGGTTGCTTAATTAGTTTCGGTGTTACTGTGCGCTCACTCGACCACTGCTGATGCCCCTACCCAGGTAACAAAAAGAGAAAGAATGCTGGTTGAGTTTGAGTTTTTATACACTGGGAGGTGGCTAGACTGGGTTGCGTCCCCgcttccc
>TU2655413
CCAGAAGTGTCCTATACAGTTATGGGAACCCCCACGTAACACGTAACCCATAATCGTCATCATTAGGCGTTCGTGTGTGACTCACCAAGGGGAGGGTAGGCGGCAAAGCTCTCCACACACATGGGCTTTCCTGGCACCATGACAATGATGGCGGCGTCTCCAGATTTCAGGGCTTTGGGGTTGTCCTCAAGCTTCTTGCCGGAACGACGGTCGATCTTCTCCTTGAGCTCGCTGAACTTGCAGGCGATGTGAGCGGTGTGGCAATCCAGCACGGGGGCATAGCCCTGGGAGATGGTGCCGGGGTGGTTCAGGATGATGACCTGAAGATTGGGGTAAAGTTTGGGTAAGGATGGGCTGGACTCTAGACCTACAGTGAAAGGGGGTTGGTACGTGGCAAAACTGAATTTAAAAAgtgcactttaaaaaaaatgtgtttatgaAAGTGCTAATTTATGGCCAGAAACGAGACATGTAGTAAAGTAGACTTAAAATATTAGTATTATCTTTCCAAAAACGACATTGAAAATTAGTTCCATCTCTCACCTGAGCGGTGAAGTTGCCGGCCTCCATTGGGGGGTCATTCTTGCTGTCTCCAGCCACGTTGCCACGACGGATATCCTTGACGGACACGTTCTTGACGTTGAATCCAACATTGTCACCGGGTAGAGCCGCTTCCAGGGTCTCGTGGTGCATCTCCACAGACTTCACCTCAGTGGTGACATTAGCGGGGGCGAAGGTGACGATCATACCGGCCTTCAGGGTGCCAGTCTCCACAGACTTCACCTCAGTGGTGACATTAGCGGGGGCGAAGGTGACGATCATACCGGCCTTCAGGGTGCCAGTCTCCACACGGCCCACGGGTACTGTTCCAATACCTGATGGGAAACCAGGGGAGAATAGATTAACGATCAAGAGCAGAAGCAAATACAGCCTATATACAATCATGAAGTCTAGGACTGGTTCTTACCGCCGATTTTGTAGACATCCTGGAGGGGCAGACGAAGGGGCTTGTCTGTGGGGCGGGAGGGGGGCAGGATTGAGTCCAGGGCCTCCAGCAGAGTCACACCGTTGGCGTTACCATCCTTACGTTCGACCTTCCATCCCTTGAACCAGCCCATCTAGAATAGGAGAATTTCTGTTTATGTACAAAGCATGACATAATACGCAAGTGACGGGGTGAGACTTTCAATGTAGTAGAATGCACTGAGGATAGGCTACTCACATTGGCACTGGCTTCCAGCATGTTGTCCCCATGCCAACCAGAGATGGGCACAAAAGCGACAGTGGCAGGGTTGTAGCCAATCTTCTTGATGTAGGTGGTGACCTCCTTCTGGATCTCCTCAAACCGCTTCTGGCTGTAGGGGGGCTCAGTAGAGTCCATCTTGTTGACGCCAACAATGAGCTGTTTCACTCCCAGAGTGTAGGCGAGGAGAGCGTGCTCACGGGTCTGGCCGTTCTTGGAGATACCAGCCTCAAACTCACCCACACCACCAGCAACAACCAGCACAGCGCAAtcagcctgggggggggggggacaagtcATGTCAGCCCAACACACTTGTTCATCTATCACCTTAGTTGGTCAGGTTTACAGTATATTCTGATTGCACTGCCCCCGCCCCCCAATTACCTGAGAGGTACCAGTGATCATGTTCTTGATGAAATCTCTGTGTCCAGGGGCATCAATGATTGTGACGTAGTACCTGCCGGTCTCAAACTTCCACAGAGAAATGTCAATGGTGATACCACGCTCCCTCTCAGCCTTCAGCTTGTCCAGCACCCAGGCATACTTGAAAGAGCCCTTGCCCATCTAAAATTAGAGGAAAGGCACATTATGTTCAATAATTCATTTTACCGAGCCTATTCCAAAGGATGC
>TU2655401
TGTGTGGATGGGCTACTCACGTTGGGGCTAGCCTCCAGCATGTTGTCCCCATGCCATCCAGAGATGGGCACAAAGGCGACAGTGGCAGGGTTGTAGCCAATCTTCTTGATGTAGGTGGTGACCTCCTTCTGGATCTCCTCAAACCGCTTCTGGCTGTAGGGGGGCTCAGTAGAGTCCATCTTGTTGACGCCAACAATGAGCTGTTTCACTCCCAGAGTGTAGGCGAGGAGAGCGTGCTCACGGGTCTGGCCGTTCTTGGAGATACCAGCCTCAAACTCACCCACACCACCAGCAACAACCAGCACAGCGCAAtcagcctgggggggggggggacaagtcATGTCAGCCCAACACACTTGTTCATCTATCACCTTAGTTGGTCAGGTTTACAGTATATTCTGATTGCACTGCCCCCGCCCCCCAATTACCTGAGAGGTACCAGTGATCATGTTCTTGATGAAATCTCTGTGTCCAGGGGCATCAATGATTGTGACGTAGTACCTGCCGGTCTCAAACTTCCACAGAGAAATGTCAATGGTGATACCACGCTCCCTCTCAGCCTTCAGCTTGTCCAGCACCCAGGCATACTTGAAAGAGCCCTTGCCCATCTAAAATTAGAGGAAAGGCACATTATGTTCAATAATTCATTTTACCGAGCCTATTCCAAAGGATGC
>TU2655410
GTCAAGACATTTAAAAGACCTTTATTAGTTACCAGCAGCTTTCTTCCAATTTAATTGTGGCATCAAACAGGTGTAGTTCTCAACCATTAACTCAAATATAACTGAAAGAGGCACTGTCAGTCATGTGACAAAGTGTATCTGCGTTGGGTTCTTTTCCTGCGAAAACTTTTACGATGGGTTTTAATCAGCATTAACCAGTCCTTAAGTATAGAGCTCAGGTTTCGAGACTCCGCAGGATGCAGGGCTGCAGACCCCACCACCCGAGGGACATCCTGTGGGAGGAGAATTCACTTTTTACCAGCCTTAACGGCAGATTTGGTGACCTTGCCGCTGGAGGCAGCCTTCTTGTCGACGGCCTTGATGACACCAACAGCAACAGTCTGCCTCATGTCACGCACAGCGAAACGACCTGAGGGAAAGAGAAAATTAGGAACGAGGCCTATTCCAAGCATAGAAGACCTTTTAAAAAGGAACAATGTCTTTGGTAGGAGGGCTTGTGGATTACTTACCAAGAGGAGGGTATTCCTGGAAGCTCTCCACACACATGGGCTTGCCGGGGATCATGTCAACGATGGCAGCGTCTCCAGACTTCAGGAACTTGGGGGCATCAATGATTGTGACGTAGTACCTGCCGGTCTCAAACTTCCACAGAGAAATGTCAATGGTGATACCACGCTCCCTCTCAGCCTTCAGCTTGTCCAGCACCCAGGCATACTTGAAAGAGCCCTTGCCCATCTAAAATTAGAGGAAAGGCACATTATGTTCAATAATTCATTTTACCGAGCCTATTCCAAAGGATGC

Function

NR:

description
Elongation factor 1-alpha, oocyte form

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2655405 False 1868 TUCP 0.54 6 35586587 35593678
TU2655413 False 1876 TUCP 0.51 3 35586587 35594913
TU2655401 False 674 TUCP 0.52 3 35587780 35594913
TU2655410 True 801 TUCP 0.47 3 35590041 35594913

Neighbor

gene id symbol gene type direction distance location
LOC110489268 LOC106570027 coding upstream 18196 35558560 ~ 35568391 (+)
LOC110489253 LOC106597474 coding upstream 65134 35441034 ~ 35521453 (+)
LOC118936453 LOC106595653 coding upstream 94069 35487909 ~ 35492518 (+)
LOC110489254 LOC106595653 coding upstream 98418 35458552 ~ 35488169 (+)
LOC110489282 LOC106588459 coding upstream 291389 35281588 ~ 35302970 (+)
LOC110489299 LOC106570032 coding downstream 43299 35638212 ~ 35643788 (+)
ncdn ncdn coding downstream 98356 35693269 ~ 35702960 (+)
LOC110489281 LOC106570035 coding downstream 109001 35703914 ~ 35715579 (+)
ago4 LOC106511154 coding downstream 182335 35777248 ~ 35814633 (+)
LOC118946548 NA coding downstream 212781 35807694 ~ 35807777 (+)
G2321779 NA non-coding upstream 1811 35584478 ~ 35584776 (+)
G2322023 LOC106570029 non-coding upstream 2401 35583814 ~ 35584186 (+)
G2322022 NA non-coding upstream 8683 35575451 ~ 35577904 (+)
G2322020 NA non-coding upstream 13310 35573054 ~ 35573277 (+)
G2322019 NA non-coding upstream 13845 35572484 ~ 35572742 (+)
G2322025 NA non-coding downstream 2925 35597838 ~ 35598075 (+)
G2322032 NA non-coding downstream 11050 35605963 ~ 35606251 (+)
G2321763 NA non-coding downstream 25556 35620469 ~ 35626505 (+)
G2322074 NA non-coding downstream 91510 35686423 ~ 35686653 (+)
G2322076 NA non-coding downstream 92453 35687366 ~ 35687567 (+)
G2321738 LOC106597474 other upstream 88460 35491131 ~ 35498127 (+)
LOC110487604 LOC106570016 other upstream 308924 35025996 ~ 35277684 (+)
LOC110489302 LOC106570022 other upstream 615961 34969069 ~ 34972560 (+)
G2321656 LOC105025880 other upstream 736196 34849178 ~ 34850391 (+)
LOC110511601 LOC106570043 other downstream 697865 36285727 ~ 36298893 (+)
G2323520 NA other downstream 733491 36328404 ~ 36408978 (+)
G2323704 NA other downstream 1052900 36647813 ~ 36648422 (+)
LOC110488401 LOC106570049 other downstream 1344169 36939068 ~ 37071496 (+)
G2324003 NA other downstream 1457152 37052065 ~ 37062067 (+)

Expression


Co-expression Network