G2328071 (LOC106588166)


Basic Information

Item Value
gene id G2328071
gene name LOC106588166
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 40155982 ~ 40157681 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2662405
gtatatgatctTCTACCGGGAAAACCAGTGTGTATTCAGCTGACAGACACATGACATTCACCTGACGCACCAACCTATTTAGGTGACCTTTTACCTCAGGCAATTACGGGAACACTTATTTGCAAATGGGAGAATTCAGAGGGCAGTGCTAAGTATGGGAGGTGAGCAAGCGCCTGAATGCCCAGCTGAAAGAGTCTGAGAAGAGACACCAGGAGGAGAAGGACTGAATGCAGACTGAAAGCGGTGAGTTCAGCCGGCGTCTTGACAAGCAGTCGAAGCACCTGCAGCGAGTGGAGGGGTAGGCGGAGGAGCGAGGTCAGAGGTTGGAGGAGTTGGAGCGGCTGCTGGGGGGCATGGAGCTGGAGGGTGTTGTCCTGAAGGACAAAATGGCCAACAGCGAGGCTGAACTGCTGCAGCTGAGAGCAGCCAAGGAGGGGGGGCAGGTGAAAAAGCAGAGGGTTGTGGTGTGAGAACTGAGGAGCTGGAGAAGGAGCTGGCTGTCCTGAAGGAGAAGATCCATCATCTGGACGACATGCTGAAGAGCCAGCAGAGGAAGGTCTGCCACATGAtccaacagcacacacacacactcggatgCATATACATGCATGcggcagatacacacacacatacagtgcattctgaaagtattcagaccctttgactttttccacattttgttacgttacagccttattgtaaaattgattACACCCCCGCCCCCCTGTATCAATCAatcattgctgttctggttagtgtttattggcttatttcactgtagagcctctagccctgctcattataccttatccaacctttcagttccaccacccacacatgcaatgacatcaccaggattcaatgatgtttctagagacaatatctctctcatcatcactcaatacctaggtttacctccactgtattcacatcctaccatacctttgtctgtacat

Function

NR:

description
tuftelin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2662405 True 956 lncRNA 0.49 4 40155982 40157681
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110518429 NA coding upstream 2507 40144276 ~ 40153475 (+)
pygo2 LOC106570112 coding upstream 16504 40109359 ~ 40139478 (+)
LOC110489454 LOC106588148 coding upstream 104011 40046685 ~ 40051971 (+)
LOC110513545 LOC106570110 coding upstream 114005 40031984 ~ 40041977 (+)
LOC110488503 LOC106570111 coding upstream 125221 40029411 ~ 40030761 (+)
LOC118946501 NA coding downstream 6125 40163806 ~ 40165019 (+)
LOC110519671 LOC106570114 coding downstream 19903 40177584 ~ 40218209 (+)
LOC118946470 NA coding downstream 65428 40223109 ~ 40225313 (+)
aqp10b LOC106570179 coding downstream 86981 40244662 ~ 40250463 (+)
LOC110511529 LOC106597731 coding downstream 219694 40377375 ~ 40378969 (+)
G2328047 NA non-coding upstream 11841 40142640 ~ 40144141 (+)
G2328052 NA non-coding upstream 21605 40133556 ~ 40134377 (+)
G2328067 NA non-coding upstream 22637 40133129 ~ 40133345 (+)
G2328066 NA non-coding upstream 27092 40128447 ~ 40128890 (+)
G2328116 NA non-coding downstream 96321 40254002 ~ 40254281 (+)
G2328117 pol3 non-coding downstream 97709 40255390 ~ 40255775 (+)
G2328137 NA non-coding downstream 132964 40290645 ~ 40290866 (+)
G2328374 NA non-coding downstream 157196 40314877 ~ 40315099 (+)
G2328385 NA non-coding downstream 171376 40329057 ~ 40329308 (+)
G2328050 NA other upstream 13915 40139912 ~ 40142067 (+)
dpm3 dpm3 other upstream 496047 39656077 ~ 39659948 (+)
G2327475 NA other upstream 601059 39547083 ~ 39554923 (+)
rps27.1 LOC106605923 other upstream 757132 39396631 ~ 39398852 (+)
G2326978 NA other upstream 976802 39175494 ~ 39179180 (+)
G2328139 NA other downstream 135214 40292895 ~ 40293320 (+)
G2329181 LOC106588233 other downstream 1044488 41202169 ~ 41210485 (+)

Expression

G2328071(LOC106588166) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
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G2328071(LOC106588166) Expression in each Bioproject

Bar chart with 15 bars.
G2328071(LOC106588166) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 80.
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Co-expression Network