XLOC_004203 (tmem169a)


Basic Information

Item Value
gene id XLOC_004203
gene name tmem169a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 30348273 ~ 30352333 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008050
CTGATTGGATGAAGACAGCATTAGCGGCGCTAGGGGGGATGCGCTGTCCTCCTCGGTGTGTCCGAAAAAAATAAACCCACCGCCACAATGTTACACGTGGTGAAGACTTGTGAATGATAAACCGGACGGATTTAAACGAACAACGCCTGCATGCATTAATCAGGGAATTTCTTGAAGcaGGTGTTTCCAGCTGCATACTGACATCATCATACCTTCATGGTCAACATGAGTGAAGGGCCCTCAGGAGACATCGGTGGTGTGGAGCTGGATGGAGGGATTGAGACGGAGACCCCGATGAACACACTTCACAGGTCAGCAGACGGAGAGGGAACCAGCACtcggaggaagaagaagaagaaaaagaaagagatcaTCTACCGTTCCGACCTGGAGGATGAGGATGCTGGGGAGGGGACATCGGCGGATGTAGATGGAGCCTGTAGTTCACCATTTGACGAAGaagaagaggaaatcCCCCCTGACAGCCGTTTTGTGACCCTAACCGGTACCATCACGCGAGGAAAGCGGAAAGGGCAAATGGTGGACATCTATATGACCCTCACTGACAAAGAGCTTAGGGATATGGCTCGCTCCAAAGAGCGCTTGGATGCTGAATGTGACGGGGTCGCGGAGGCCAAGCAAAAACCCTGTGCTCTGGGGCTGAGCCAGGGTCCTCACGTCCTCCTCTGGAGCCTTTCCTGCTCCCCGTTCATCTTTGTCCTTTCCTTCATCACCTCATTTTACTACGGTACCCTTACCTGGTACAACGTCTTTCTGGTTTACAATGAAGAGCGCAGCTTTCTGCACAAGATCACATTGTGTCCCTTGCTCATTCTGTTATATCCGGTGCTAATCATGGCGTTGTGTGTTTGCATGGGGGTTTACGCTGCTGTTTCCCAGCTCTCCTGGGTGTTTGGAGAGTGGTGGCTGGCGGTGAGGGACCTGGAGAAGGGCTTCTGTGGGTGGATGTGTGGAAAACTGGGGTTGGAGGACTGCGCCCCATATAATGTGGTTGAGCTGCTGGATTCAGACACTCTTTCCGGGACCCTCCAGGGAAAGAGGTTGGAGGACGTTGAGCAGACTTCTAATTTGTGAGCTGAGAATATGGAAAAATGGTGTATTTTAAGTGATGTCAGAAGGATGGCATGTTGTTGATTGGCATAAATCATTTTTACTTGTCACTAAGATGAAATCTTTGAAGGATTTTTTGTTCAAA

Function

symbol description
tmem169a Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM169 (transmembrane protein 169).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-090107-1 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM169 (transmembrane protein 169).

Ensembl:

ensembl_id ENSDARG00000027131

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008050 True 1216 mRNA 0.50 3 30348273 30352333

Neighbor

gene id symbol gene type direction distance location
XLOC_004202 cflara coding downstream 6842 30332959 ~ 30341431 (-)
XLOC_004201 scml2 coding downstream 189664 30106182 ~ 30158609 (-)
XLOC_004200 CR318645.1 coding downstream 247016 30101142 ~ 30101257 (-)
XLOC_004199 ace2 coding downstream 351916 29981678 ~ 29996357 (-)
XLOC_004198 CU652893.1 coding downstream 386372 29961114 ~ 29961901 (-)
XLOC_004204 pecr coding upstream 3109 30355442 ~ 30364847 (-)
XLOC_004205 map4k3a coding upstream 13335 30365668 ~ 30508851 (-)
XLOC_004206 slc8a1a coding upstream 183610 30535943 ~ 30612166 (-)
XLOC_004207 zgc:153665 coding upstream 274435 30626768 ~ 30636163 (-)
XLOC_004208 ier2b coding upstream 686076 31038409 ~ 31039533 (-)
XLOC_004063 CR854846.1 misc downstream 14220595 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 17656582 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 17726506 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 17756977 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 17835011 12512966 ~ 12513262 (-)
XLOC_004193 NA non-coding downstream 611026 29734578 ~ 29737247 (-)
XLOC_004190 NA non-coding downstream 803284 29537982 ~ 29544989 (-)
XLOC_004188 NA non-coding downstream 1028354 29099927 ~ 29319919 (-)
XLOC_004211 NA non-coding upstream 847886 31200219 ~ 31202839 (-)
XLOC_004212 NA non-coding upstream 852592 31204925 ~ 31211308 (-)
XLOC_004216 NA non-coding upstream 1797885 32150218 ~ 32157526 (-)
XLOC_004217 NA non-coding upstream 2013579 32365912 ~ 32391388 (-)
XLOC_004218 NA non-coding upstream 2104983 32457316 ~ 32563722 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_05888356_05890267 TMEM169A coding CI01000306 null 5888069 ~ 5890366 (-)