Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC118946648 |
| gene name | NA |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NW_023493657.1 |
| NCBI id | JAAXML020000845.1 |
| chromosome length | 4173621 |
| location | 3582517 ~ 3584352 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| Zgc:158463 protein |
| id | name | namespace |
|---|---|---|
| GO:0060070 | canonical Wnt signaling pathway | biological_process |
| GO:0060071 | Wnt signaling pathway, planar cell polarity pathway | biological_process |
| GO:0042074 | cell migration involved in gastrulation | biological_process |
| GO:0021535 | cell migration in hindbrain | biological_process |
| GO:0014812 | muscle cell migration | biological_process |
| GO:0001756 | somitogenesis | biological_process |
| GO:0036342 | post-anal tail morphogenesis | biological_process |
| GO:0000902 | cell morphogenesis | biological_process |
| GO:0003401 | axis elongation | biological_process |
| GO:0055002 | striated muscle cell development | biological_process |
| GO:0035844 | cloaca development | biological_process |
| GO:0045813 | positive regulation of Wnt signaling pathway, calcium modulating pathway | biological_process |
| GO:0000132 | establishment of mitotic spindle orientation | biological_process |
| GO:0044782 | cilium organization | biological_process |
| GO:0060972 | left/right pattern formation | biological_process |
| GO:0001839 | neural plate morphogenesis | biological_process |
| GO:0001841 | neural tube formation | biological_process |
| GO:0097475 | motor neuron migration | biological_process |
| GO:0048048 | embryonic eye morphogenesis | biological_process |
| GO:0060027 | convergent extension involved in gastrulation | biological_process |
| GO:0030903 | notochord development | biological_process |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005515 | protein binding | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_005041508.1 | True | 1836 | mRNA | 0.53 | 1 | 3582517 | 3584352 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118946581 | NA | coding | downstream | 571 | 3581793 ~ 3581946 (-) |
| LOC118946709 | NA | coding | downstream | 1099 | 3577488 ~ 3581418 (-) |
| LOC118946659 | NA | coding | downstream | 594563 | 2986120 ~ 2987954 (-) |
| LOC118946580 | NA | coding | downstream | 596968 | 2985396 ~ 2985549 (-) |
| LOC118946647 | NA | coding | downstream | 623888 | 2956794 ~ 2958629 (-) |
| LOC118946582 | NA | coding | upstream | 24041 | 3608393 ~ 3608546 (-) |
| LOC118946649 | NA | coding | upstream | 24765 | 3609117 ~ 3610952 (-) |
| LOC118946583 | NA | coding | upstream | 50641 | 3634993 ~ 3635146 (-) |
| LOC118946650 | NA | coding | upstream | 51365 | 3635717 ~ 3637552 (-) |
| LOC118946725 | NA | coding | upstream | 77598 | 3592515 ~ 3665893 (-) |
| G2330160 | NA | non-coding | downstream | 630607 | 2951662 ~ 2951910 (-) |
| G2330159 | NA | non-coding | downstream | 636499 | 2945790 ~ 2946018 (-) |
| G2330153 | NA | non-coding | downstream | 639634 | 2884156 ~ 2942883 (-) |
| G2330142 | NA | non-coding | downstream | 1342051 | 2222753 ~ 2240466 (-) |
| G2330184 | NA | non-coding | upstream | 11578 | 3595930 ~ 3621789 (-) |
| G2330187 | NA | non-coding | upstream | 74917 | 3659269 ~ 3660130 (-) |
| G2330206 | NA | non-coding | upstream | 293835 | 3878187 ~ 3933448 (-) |
| G2330215 | NA | non-coding | upstream | 303539 | 3887891 ~ 3888458 (-) |
| LOC118946704 | NA | other | downstream | 1401454 | 2162218 ~ 2182593 (-) |
| G2330094 | NA | other | downstream | 1981636 | 1556401 ~ 1623113 (-) |
| G2330207 | NA | other | upstream | 330829 | 3915181 ~ 3940212 (-) |
