LOC118946650


Basic Information

Item Value
gene id LOC118946650
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493657.1
NCBI id JAAXML020000845.1
chromosome length 4173621
location 3635717 ~ 3637552 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005041511.1
tacctggttgatcctgccagtagcatatgcttgtctcaaagattaagccatgcaagtctaagtacacacggccggtacagtgaaactgcgaatggctcattaaatcagttatggttcctttgatcgctccaacgttacttggataactgtggcaattctagagctaatacatgccaacgagcgctgacctccggggatgcgtgcatttatcagatccaaaacccatgcgggccaatctcggttgccccggccgctttggtgactctagataacttcgagccgatcgcgcgccctttgtggcggtgacgtctcattcgaatgtctgccctatcaactttcgatggtactttctgtgcctaccatggtgaccacgggtaacggggaatcagggttcgattccggagagggagcctgagaaacggctaccacatccaaggaaggcagcaggcgcgcaaattacccactcccgactcggggaggtagtgacgaaaaataacaatacaggactctttcgaggccctgtaattggaatgagtacactttaaatcctttaacgaggatccattggagggcaagtctggtgccagcagccgcggtaattccagctccaatagcgtatcttaaagttgctgcagttaaaaagctcgtagttggatctcgggatcgagctggcggtccgccgcgaggcgagctaccgcctgtcccagcccctgcctctcggcgccccctcgatgctcttaactgagtgtcccgcggggtccgaagcgtttactttgaaaaaattagagtgttcaaagcaggcccggtcgcctgaataccgcagctaggaataatggaataggactccggttctattttgtgggtttttcttctgaactggggccatgattaagagggacggccgggggcattcgtattgtgccgctagaggtgaaattcttggaccggcgcaagacggacgaaagcgaaagcatttgccaagaatgttttcattaatcaagaacgaaagtcggaggttcgaagacgatcagataccgtcgtagttccgaccataaacgatgccaactagcgatccggcggcgttattcccatgacccgccgggcagcgtccgggaaaccaaagtctttgggttccggggggagtatggttgcaaagctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggcttaatttgactcaacacgggaaacctcacccggcccggacacggaaaggattgacagattgatagctctttctcgattctgtgggtggtggtgcatggccgttcttagttggtggagcgatttgtctggttaattccgataacgaacgagactccggcatgctaactagttatgcggccccgagcggtcggcgtccaacttcttagagggacaagtggcgttcagccacacgagattgagcaataacaggtctgtgatgcccttagatgtccggggctgcacgcgcgccacactgagcggatcagcgtgtgtctacccttcgccgagaggcgtgggtaacccgatgaaccccactcgtgatagggattggggattgcaattatttcccatgaacgaggaattcccagtaagcgcgggtcataagctcgcgttgattaagtccctgccctttgtacacaccgcccgtcgctactaccgattggatggtttagtgaggtcctcggatcggccccgctgaggtcggtcacggccctggcggagcgccgagaagacgatcaaacttgactatctagaggaagtaaaagtcgtaacaaggtttccgtaggtgaacctgcggaaggatcatta

Function

NR:

description
Zgc:158463 protein

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0060071 Wnt signaling pathway, planar cell polarity pathway biological_process
GO:0042074 cell migration involved in gastrulation biological_process
GO:0021535 cell migration in hindbrain biological_process
GO:0014812 muscle cell migration biological_process
GO:0001756 somitogenesis biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0000902 cell morphogenesis biological_process
GO:0003401 axis elongation biological_process
GO:0055002 striated muscle cell development biological_process
GO:0035844 cloaca development biological_process
GO:0045813 positive regulation of Wnt signaling pathway, calcium modulating pathway biological_process
GO:0000132 establishment of mitotic spindle orientation biological_process
GO:0044782 cilium organization biological_process
GO:0060972 left/right pattern formation biological_process
GO:0001839 neural plate morphogenesis biological_process
GO:0001841 neural tube formation biological_process
GO:0097475 motor neuron migration biological_process
GO:0048048 embryonic eye morphogenesis biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0030903 notochord development biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005515 protein binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005041511.1 True 1836 mRNA 0.53 1 3635717 3637552
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118946583 NA coding downstream 571 3634993 ~ 3635146 (-)
LOC118946649 NA coding downstream 24765 3609117 ~ 3610952 (-)
LOC118946582 NA coding downstream 27171 3608393 ~ 3608546 (-)
LOC118946648 NA coding downstream 51365 3582517 ~ 3584352 (-)
LOC118946581 NA coding downstream 53771 3581793 ~ 3581946 (-)
LOC118946725 NA coding upstream 24398 3592515 ~ 3665893 (-)
LOC118946591 NA coding upstream 28714 3666266 ~ 3666418 (-)
LOC118946584 NA coding upstream 257493 3895045 ~ 3895198 (-)
LOC118946651 NA coding upstream 258217 3895769 ~ 3897604 (-)
LOC118946710 NA coding upstream 274200 3911752 ~ 3915682 (-)
G2330184 NA non-coding downstream 13928 3595930 ~ 3621789 (-)
LOC118946659 NA non-coding downstream 648142 2986120 ~ 2987954 (-)
G2330160 NA non-coding downstream 683807 2951662 ~ 2951910 (-)
G2330159 NA non-coding downstream 689699 2945790 ~ 2946018 (-)
G2330153 NA non-coding downstream 692834 2884156 ~ 2942883 (-)
G2330187 NA non-coding upstream 21717 3659269 ~ 3660130 (-)
G2330206 NA non-coding upstream 240635 3878187 ~ 3933448 (-)
G2330215 NA non-coding upstream 250339 3887891 ~ 3888458 (-)
G2330205 NA non-coding upstream 275851 3913403 ~ 3934842 (-)
G2330211 NA non-coding upstream 276667 3914219 ~ 3935710 (-)
LOC118946704 NA other downstream 1454654 2162218 ~ 2182593 (-)
G2330094 NA other downstream 2034836 1556401 ~ 1623113 (-)
G2330207 NA other upstream 277629 3915181 ~ 3940212 (-)

Expression

LOC118946650 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: -0.5 to 0.5.
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Co-expression Network