Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110513705 |
| gene name | exosc9 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NW_023493658.1 |
| NCBI id | JAAXML020000857.1 |
| chromosome length | 2864942 |
| location | 1192764 ~ 1202030 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| exosc9 | Predicted to enable RNA binding activity. Predicted to be involved in RNA metabolic process. Predicted to act upstream of or within rRNA processing. Predicted to be located in cytoplasm; nucleolus; and nucleoplasm. Predicted to be part of cytoplasmic exosome (RNase complex) and nuclear exosome (RNase complex). Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia. Orthologous to human EXOSC9 (exosome component 9). |
| description |
|---|
| PREDICTED: exosome complex component RRP45-like, partial |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036971892.1 | False | 1884 | mRNA | 0.49 | 12 | 1192764 | 1202030 |
| TU2666377 | False | 593 | TUCP | 0.45 | 4 | 1200147 | 1201986 |
| TU2666376 | True | 359 | TUCP | 0.46 | 3 | 1200512 | 1201986 |
1,192,000
1,194,000
1,196,000
1,198,000
1,200,000
1,202,000
1,202,000
1,204,000
1,206,000
1,208,000
1,210,000
1,212,000
NW_023493658.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110513306 | LOC105006014 | coding | downstream | 79388 | 1098558 ~ 1113376 (-) |
| LOC110513304 | NA | coding | downstream | 114190 | 1077670 ~ 1078814 (-) |
| LOC118946760 | LOC106610545 | coding | downstream | 243276 | 806485 ~ 949488 (-) |
| LOC110519451 | NA | coding | downstream | 396782 | 733803 ~ 805684 (-) |
| LOC118946761 | NA | coding | downstream | 688165 | 500426 ~ 504599 (-) |
| LOC110511394 | LOC106591068 | coding | upstream | 25381 | 1227411 ~ 1236818 (-) |
| LOC110513025 | exosc9 | coding | upstream | 183230 | 1385260 ~ 1393716 (-) |
| LOC110518942 | LOC106591068 | coding | upstream | 216811 | 1418841 ~ 1426336 (-) |
| LOC118946762 | LOC106591691 | coding | upstream | 692337 | 1875707 ~ 1896708 (-) |
| LOC110511350 | LOC106601386 | coding | upstream | 732476 | 1934506 ~ 1953566 (-) |
| G2330925 | NA | non-coding | downstream | 2242 | 1156067 ~ 1190522 (-) |
| G2330931 | NA | non-coding | downstream | 4315 | 1185643 ~ 1188449 (-) |
| G2330927 | NA | non-coding | downstream | 5155 | 1183475 ~ 1187609 (-) |
| G2330933 | NA | non-coding | downstream | 47324 | 1123988 ~ 1145440 (-) |
| G2330924 | NA | non-coding | downstream | 70859 | 1119718 ~ 1121905 (-) |
| G2331309 | NA | non-coding | upstream | 22052 | 1224082 ~ 1414625 (-) |
| G2331305 | NA | non-coding | upstream | 23378 | 1225408 ~ 1425079 (-) |
| G2331310 | NA | non-coding | upstream | 49621 | 1251651 ~ 1271417 (-) |
| G2331346 | NA | non-coding | upstream | 65909 | 1267939 ~ 1428158 (-) |
| G2331351 | NA | non-coding | upstream | 78363 | 1280393 ~ 1287965 (-) |
| G2330705 | LOC106597013 | other | downstream | 507934 | 664211 ~ 684830 (-) |
| G2330702 | NA | other | downstream | 557885 | 633911 ~ 634879 (-) |
| G2330314 | NA | other | downstream | 1151654 | 39516 ~ 41110 (-) |
| G2331536 | LOC106601386 | other | upstream | 749067 | 1951097 ~ 1993315 (-) |
| G2331554 | LOC106601385 | other | upstream | 835857 | 2037887 ~ 2039068 (-) |
| G2331771 | NA | other | upstream | 1340012 | 2542042 ~ 2544584 (-) |
