XLOC_004208 (ier2b)


Basic Information

Item Value
gene id XLOC_004208
gene name ier2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 31038409 ~ 31039533 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008064
TTTTAGTTTTGCAATCCACCTTGAAGAGCTCAAAGCGCAGaggtttaaaaatagaaaaacctTAAGCATTACGATACATTATAAACATAATGGACGTCGAGGCCAAGAGAATCATGGCTCTGTCTATTAGTAAACTGTACTCATTAAGGACCCAGCGCGGGGGACTGAGGCTTCACCGGAGTCTCCTGCTCTCTATGACCATGAGAGCCGCCCGGGACATTTACCACACCGCGCAGCTGCTCCGAGACGAGGAGGAGGAACAGGTCGTCCCGTGCGCCCCGGAGGAGCCCATGGAGGTTACCAAAGACCCTCCACAGACTGTAACCCCAATTGAGTTCGTGGCGAACCCTCAAGAAGCCAAAGACGCTCTGGAGGAGGAGGACAAAGAGAACCGGTGCGCTCCTGAACGCCACTCCAGGAAGCGCCGCGTCAAGACAGCGCTCGAGCCCGACTTTCTGCCTCTCAAGAAGGCGAAAATGGACACAGACGAGGACAAACAACACCTCCAAGCCGAGGTTTTGAGGAATAGTAATGGAAACAGCTGTCGCCAGGCTGAGACTCTGACCGCGTTTCCAGTTAACCGTGCCATTGTGGCGTGTTGAGAAAGACGCGCTTGGATCACTCCGAGAATTGATCTCCCTTAATTGGGAtatttttgttttcctgaacTGACTGGTTCGGAAATGCGGTCCTGAGACCTGTGAGGCCGGCTGTGCTCGCCATATGAGCTCAAGGAGAGGCCAGAACGAGCAGGATTACAGGACAGGTGGTGGATACGGCGATCCCAGTCCCATCGGAACCACCAGAGCTGCTTCATTGTTCATTGAGGAGTCAGATGACTCGGATGAACTGGTTGAACTGGGAAGGGAGGCTCGAATAATGTCTTCTGTCAAGCCTATGAACTTAACAACCTCAAAAAGGAACAAATGTGACGGTGAACGAGACAGAACACGTACTGTGATGATACTTGAAAAATGTCTTGAATGATGCCAAAAACGTGTTAAATGTTACTTGCACAGAACAATACTTGCTatttattatagttatatgaGGACTTGAACTGATATCACATGAAGCTGATTTCAGTGTTTTATAttgaaataaacatgcaaatgttTCAAACTC

Function

symbol description
ier2b Is expressed in hindbrain neural keel; neuromast mantle cell; neuromast support cell; and tail bud. Orthologous to human IER2 (immediate early response 2).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8244 Is expressed in hindbrain neural keel; neuromast mantle cell; neuromast support cell; and tail bud. Orthologous to human IER2 (immediate early response 2).

Ensembl:

ensembl_id ENSDARG00000086881

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008064 True 1125 mRNA 0.49 1 31038409 31039533

Neighbor

gene id symbol gene type direction distance location
XLOC_004207 zgc:153665 coding downstream 402246 30626768 ~ 30636163 (-)
XLOC_004206 slc8a1a coding downstream 426243 30535943 ~ 30612166 (-)
XLOC_004205 map4k3a coding downstream 529558 30365668 ~ 30508851 (-)
XLOC_004204 pecr coding downstream 673562 30355442 ~ 30364847 (-)
XLOC_004203 tmem169a coding downstream 686076 30348273 ~ 30352333 (-)
XLOC_004209 si:cabz01069582.1 coding upstream 105187 31144720 ~ 31146808 (-)
XLOC_004210 si:dkey-238i5.3 coding upstream 129164 31168697 ~ 31172276 (-)
XLOC_004211 NA coding upstream 160686 31200219 ~ 31202839 (-)
XLOC_004212 NA coding upstream 165392 31204925 ~ 31211308 (-)
XLOC_004213 nacc1b coding upstream 179423 31218956 ~ 31234584 (-)
XLOC_004063 CR854846.1 misc downstream 14910731 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 18346718 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 18416642 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 18447113 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 18525147 12512966 ~ 12513262 (-)
XLOC_004200 CR318645.1 non-coding downstream 937152 30101142 ~ 30101257 (-)
XLOC_004198 CU652893.1 non-coding downstream 1076508 29961114 ~ 29961901 (-)
XLOC_004193 NA non-coding downstream 1301162 29734578 ~ 29737247 (-)
XLOC_004190 NA non-coding downstream 1493420 29537982 ~ 29544989 (-)
XLOC_004188 NA non-coding downstream 1718490 29099927 ~ 29319919 (-)
XLOC_004216 NA non-coding upstream 1110685 32150218 ~ 32157526 (-)
XLOC_004217 NA non-coding upstream 1326379 32365912 ~ 32391388 (-)
XLOC_004218 NA non-coding upstream 1417783 32457316 ~ 32563722 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G433683 NA non-coding CI01000306 null 6253305 ~ 6254494 (+)