LOC118946762 (LOC106591691)


Basic Information

Item Value
gene id LOC118946762
gene name LOC106591691
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493658.1
NCBI id JAAXML020000857.1
chromosome length 2864942
location 1875707 ~ 1896708 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036971874.1
ATGAGTCTTCTATTAGACAGTGTGACAACAGTAGAGGACCTGGTGTCTGTGATGGTGTGTTTTAGTGAGAAAATAGtaagattactgtctctctcttttcttttctcagagcctgatgatgtgaggctggtgggaggaggcagtcgctgtgctggtggagtggagtggtatgaccagggagagtggaggatTGTGGGAGCTGAGGACTGGGACCAGAGGGATGTAgctgcagtagtgtgtagacagctggGTTGTGGCTCCACTGTTTCAGTACCACCTggaaacaccactagagggattagAGTTTACTGTTCTTGGTCTGAGTCTTCACTGAGGGAGTGTAGAAGAACGTATGAACTCCTTCCaggactcacagtgatctgctcagATCTCCTGGTCCAGCCTGATATCTTCCTGACTGACCCAATGGGAGGGGTCTTCAGGGGCCACCAGGGGCCCGAGATGTTCAGGGGCTACAACTTCACCATCACCTGCTCCACTCAGCCACAGTACCCAGGAGGCTCCTTCCTCCTCACATTCACCGGTTCCAACAGAACCCAGACCCAGccagctgtcaatcactctgctgccttcctcttccctgctgcagatgactcccaccaagggacctacagctgtgtttatgacaattatgttttctctcataacttctcctctgagagtgagctcctctcc
>TU2666680
AGCAGTTCAATattagtcaactttattatcccacatggagaaattcatgtgtccatacaaaccattctaaaccccaataacaagtagtgttttatggaactactaatacttgtcaaccacaaagcattactgctgttagaataacagaatcactgtcatcatctgtcctcaccactgtgttttcctctctgctgtttacaGCTGAACTCTCAGTCAGACTGGTGAATGGGACCACTTCCTGTTCTGGGACAGTGGAAGTCTTCTACAGAGGACAGTGGACACGTCTATGTTTTAGTTGGTGGTGGAGAATAATGATAGAGGCTAATGTTGTGTGTAGAGAGCTGGATTGTGGGAATCCTGTAGCTGAATCTAGAGGACGTCTGGTTGAAGATGGAAGAAGAGGAGTCACACTATATAGTATTTGCAAAGGAAATGAGTCTTCTATTAGACAGTGTGACAACAGTAGAGGACCTGGTGTCTGTGATGGTGGATATTATCATCATGTGACCTGTTCAGagtctgtgcggcttgtggatggagctggtctctgctctgggagagtggaggtgaagtccaatcagtcctgggcctcagtgtgtgaagctgactttgaccggcaggatgcagaggtagtctgtagggatgttggctgtggggctcctgcagctctacagggggggctctatggagaaggtgagggtcagacctgggataaagagttccagtgtaaaggcaaagagtcccttctcctggactgtgacacctcagacagagagaacaacacctgcctacctggtaatgctgttggactcacctgc
>TU2666681
GTAGAAGAACGTATGAACTCCTTCCaggactcacagtgatctgctcagagtctgtgcggcttgtggatggagctggtctctgctctgggagagtggaggtgaagtccaatcagtcctgggcctcagtgtgtgaagctgactttgaccggcaggatgcagaggtagtctgtagggatgttggctgtggggctcctgcagctctacagggggggctctatggagaaggtgagggtcagacctgggataaagagttccagtgtaaaggcaaagagtcccttctcctggactgtgacacctcagacagagagaacaacacctgcctacctggtaatgctgttggactcacctgc

Function

NR:

description
deleted in malignant brain tumors 1 protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036971874.1 False 696 mRNA 0.52 3 1894367 1896708
TU2666680 False 818 TUCP 0.47 2 1875707 1876952
TU2666681 True 350 lncRNA 0.55 2 1875707 1895534
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Neighbor

gene id symbol gene type direction distance location
LOC110518942 LOC106591068 coding downstream 468031 1418841 ~ 1426336 (-)
LOC110513025 exosc9 coding downstream 500651 1385260 ~ 1393716 (-)
LOC110511394 LOC106591068 coding downstream 657549 1227411 ~ 1236818 (-)
LOC110513705 exosc9 coding downstream 692337 1192764 ~ 1202030 (-)
LOC110513306 LOC105006014 coding downstream 780991 1098558 ~ 1113376 (-)
LOC110511350 LOC106601386 coding upstream 37798 1934506 ~ 1953566 (-)
LOC118946763 LOC106591540 coding upstream 112832 2009540 ~ 2012481 (-)
LOC110497191 LOC106597766 coding upstream 258027 2154735 ~ 2176616 (-)
LOC118946770 NA coding upstream 342254 2238654 ~ 2239683 (-)
G2331523 NA non-coding downstream 1802 1872479 ~ 1892565 (-)
G2331528 NA non-coding downstream 4427 1883267 ~ 1889940 (-)
G2331524 LOC106597013 non-coding downstream 20055 1873470 ~ 1874312 (-)
G2331521 NA non-coding downstream 24013 1870117 ~ 1870354 (-)
G2331520 NA non-coding downstream 24463 1869201 ~ 1869904 (-)
G2331535 NA non-coding upstream 43440 1940148 ~ 1997674 (-)
G2331538 NA non-coding upstream 68031 1964739 ~ 1965078 (-)
G2331549 NA non-coding upstream 118951 2015659 ~ 2016595 (-)
G2331555 LOC106601385 non-coding upstream 142464 2039172 ~ 2039670 (-)
LOC118946762 LOC106591691 other downstream 17415 1875707 ~ 1896708 (-)
G2331305 NA other downstream 469288 1225408 ~ 1425079 (-)
LOC118946760 LOC106610545 other downstream 1075774 806485 ~ 949488 (-)
G2330705 LOC106597013 other downstream 1209537 664211 ~ 684830 (-)
G2331536 LOC106601386 other upstream 54389 1951097 ~ 1993315 (-)
G2331554 LOC106601385 other upstream 141179 2037887 ~ 2039068 (-)
G2331771 NA other upstream 645334 2542042 ~ 2544584 (-)
G2331942 LOC106602138 other upstream 910264 2755110 ~ 2809111 (-)
G2331519 NA non-coding downstream 6568 1867796 ~ 1869139 (-)
G2331518 NA non-coding downstream 9067 1866412 ~ 1866640 (-)
G2330702 NA other downstream 1240828 633911 ~ 634879 (-)

Expression

LOC118946762(LOC106591691) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.6.
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LOC118946762(LOC106591691) Expression in each Bioproject

Bar chart with 18 bars.
LOC118946762(LOC106591691) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 8.
End of interactive chart.

Co-expression Network