LOC110511350 (LOC106601386)


Basic Information

Item Value
gene id LOC110511350
gene name LOC106601386
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493658.1
NCBI id JAAXML020000857.1
chromosome length 2864942
location 1934506 ~ 1953566 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036971881.1
GAACTCTCAGTCAGACTGGTGAATGGGACCACTTCCTGTTCTGGGACAGTGGAAGCCTTCCATGAAGGAGAGTGGTCAGGTCTATGTTTTAGGTGGTTTTGGAGCATGATGAGACAGGCTACGGTTGTGTGTAGACAGCAGGGCTGTGGGAATCCtgtagctgcctctagaggaccTCTGATTGAAGATGGAAGAATAGGAGTCAGACTATATAGTAGATGCAGGGGAAATGAGTCTTCTACTAGACAGTGTGACAACAGAAGAGGACATGGTGTCTGTGATGGTGAATATTATCATCATGTGACCTGTTCAGagtctgtgcggcttgtggatggagctggtctctgctctgggagagtggaggtgaagtccaatcagtcctgggcctcagtgtgtgaagctgaCTTTGACCGGCAGGATGCAGAGGTAGTCTGTGGGGAGCTTGGCTGTGGggctcctgcagctctacagggggggctctatggagaaggtgagggtcagacctgggataaagagttccagtgtaaagGCAAAGAGTCCCGTCTCCTGGACTGTGACACCTCAGACAGAAAAAACAACACCTGCCTACCTGGTAATGctgttggactcacctgctcagagcctaatgatgtgaggctggtgggaggaggcagtcgctgtgctggtggagtggagcggtacgaccagggagagtggaggactgTGGGAGCTGGCTGGAACCAGAGGGATGTAgctgcagtagtgtgtagacagctggGTTGTGGCTCCAATGTTTCAGAACTACCTggaaacaccactagagggattagAGTTTACTGTCCTGAGTCTGAGTCTTCACTGAGGGAGTGTAGAAGAATGTATGATCTCCGtcctggactcacagtgatctgctcagATCTCCTGGTCCAGCCTGATATCTTCCTGACTGACCCAATGGGAGGGGTCTCCAGGGGCCACCAGGGGCCCGAGATGTTCAGGGGCTACAACTTCACCATCACCTGCTCCACTCAGCCACAGTACCCAGGAGGCTCCTTCCTCCTCACGTTCACCGGCTCCAACAGAACCCAGACCCAGccagctgtcaatcactctgctgccttcctcttccctgctgcagatgactcccaccaagggaactacagctgtgtttatgacaattatgttttctctcataacttctcctctgagagtgagctcctctcc
>TU2666688
GTGTGACAACAGAAGAGGACATGGTGTCTGTGATGGTGAATATTATCATCATGTGACCTGTTCAGGTAAGAGACTGGTCATATTGagagatttatttatacattatacaatattaccatgtatcatgttttatgtgttttatttcatttaaatagagggagagatgtcagatgtatttaaacattatatttgtgtttgtcatattggtttatgggagatgttcatgggcagatcattgtagttcagatggtactgaagtgaagctgcctgatgg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036971881.1 False 1203 mRNA 0.53 4 1934506 1953566
TU2666688 True 274 lncRNA 0.35 2 1936189 1953318
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118946762 LOC106591691 coding downstream 37798 1875707 ~ 1896708 (-)
LOC110518942 LOC106591068 coding downstream 508170 1418841 ~ 1426336 (-)
LOC110513025 exosc9 coding downstream 540790 1385260 ~ 1393716 (-)
LOC110511394 LOC106591068 coding downstream 697688 1227411 ~ 1236818 (-)
LOC110513705 exosc9 coding downstream 732476 1192764 ~ 1202030 (-)
LOC118946763 LOC106591540 coding upstream 55974 2009540 ~ 2012481 (-)
LOC110497191 LOC106597766 coding upstream 201169 2154735 ~ 2176616 (-)
LOC118946770 NA coding upstream 285396 2238654 ~ 2239683 (-)
G2331523 NA non-coding downstream 41941 1872479 ~ 1892565 (-)
G2331528 NA non-coding downstream 44566 1883267 ~ 1889940 (-)
G2331524 LOC106597013 non-coding downstream 60194 1873470 ~ 1874312 (-)
G2331521 NA non-coding downstream 64152 1870117 ~ 1870354 (-)
G2331538 NA non-coding upstream 11173 1964739 ~ 1965078 (-)
G2331549 NA non-coding upstream 62093 2015659 ~ 2016595 (-)
G2331555 LOC106601385 non-coding upstream 85606 2039172 ~ 2039670 (-)
G2331556 NA non-coding upstream 86656 2040222 ~ 2045708 (-)
G2331562 NA non-coding upstream 92057 2045623 ~ 2055072 (-)
G2331305 NA other downstream 509427 1225408 ~ 1425079 (-)
LOC118946760 LOC106610545 other downstream 1115913 806485 ~ 949488 (-)
G2330705 LOC106597013 other downstream 1249676 664211 ~ 684830 (-)
G2331554 LOC106601385 other upstream 84321 2037887 ~ 2039068 (-)
G2331771 NA other upstream 588476 2542042 ~ 2544584 (-)
G2331942 LOC106602138 other upstream 853406 2755110 ~ 2809111 (-)

Expression

LOC110511350(LOC106601386) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.75.
End of interactive chart.

LOC110511350(LOC106601386) Expression in each Bioproject

Bar chart with 19 bars.
LOC110511350(LOC106601386) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
End of interactive chart.

Co-expression Network