LOC110497191 (LOC106597766)


Basic Information

Item Value
gene id LOC110497191
gene name LOC106597766
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493658.1
NCBI id JAAXML020000857.1
chromosome length 2864942
location 2154735 ~ 2176616 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036971895.1
ACATTGAGCTCACTCAGAAACACACTGAGTACGTCTCTCAGACACTCGACGAGAGACGAGACACCAAGTGTTTATCAAACGTTGAGCAACATTTTACTGACGGTTCTTTCTCAAGACTGTCAGTCAGATACACACGGAAGGAAGAGACTGATGGAAACTATGGtctgTCCAATGGGCAGTGGTGCCAGTAGACTCTACAGCTCCCTGGCCCAGACCCTAGTCAGCACCAGCACCACTACCACCCCGCTGGCCCAGCACCCCTCCCCCTCACAGGGGTGTCACTCTCCCCCGGGGGGGCACCCCCTGCAGCTGCTGAGGGAGTGTGAGGAGGCTCTACGGGACAGGCCTCCTCGCCTCCTCAGAGCCTTCATCTGCCccggggagggagaggtggacaggGAGGAAGTGGACAACGATGCCACCCAGAGGACCATCAGAGTTATGCAGTGGAACATACTGGCTCAAGctctagGTGAAGGCATGGACAGTTTCGTCAACTGTCCCCTGGAAGCCCTGAACTGGGCGGAGCGTAAATACCTCATCCTAGAAGAGATCCTCACCTACCGGCCTCACATCCTGTGTCTACAGGAAGTCGACCACTACTACGACACCTTCCAGCCAATCCTGGCCAGCCTGGGTTACCGCGGCAACTTCTGCCCCAAGCCCTGGTCTCCGTGTTTGGATGTGGAGGGCAACAACGGTCCGGATGGATGTGCTCTGTTCTACGATGAAGCCCGGTTGGACTTGGTGGATAGTGTGAATGTCCGGCTGTGTGCCCTTTTCACACCCACCAACCAGGTGGCGGTTGTCACGACGCTGCGTTGCAGGGTGACAGGCCGGCGGCTGTGTGTTGCCGTGACGCACCTCAAAGCCCGGAGCGGCTGGGAATGCCTCCGTAGTGCCCAGGGTTCCGACCTTCTCCGGAACCTCACCACCCTCACCCAATCACCGGGGGGTCCTTCGGGTCCCATCGGCGTCACCCCAGACACCCCTCTCCTTGTCTGCGGCGACTTCAACGCTGTGCCTTCCGAGGACGTCTACCAGCGTTTCGCCTCGTCACCGTTGATCCTTGACTCCGCCTATAAACGGTTAAGCCGGGACGGGCTTTCGGAACCAGCCTATACCACGTGGAAGATCCGGCCGACGGGAGAGTGTTGCAACACATTGGATTATATCTGGTACTCTAGAGAAGCTTTCAGTGTGGACGCCGTGTTGGATATGCCTACAGAGGAACAGATTGGCCCCAACAGGCTTCCGTCGTACAACTACCCCTCCGATCACCTCTCGCTGGTGTGTGACTTCAGCTTTAAaaagcaggaggaggagtgaagaggatCATATGGACATTTGATTGACAGAACGAGGGATGGAGGGAACAGaacgagggatggagggaatagaagCGCCACTGTCCCTCTGAGTCCGAACCCATCTCTCTGGAGTATGATGactggagaacaggaggagggaaATAGCGAGGAGACTACCCGCTTGGTGTGAGCTTACTTTTCAGAAGTCATGTTATCGATTTAAAACACTGATTGAAGGAGAGACCGAGAGGAATGGACTGGACAGACTGCTGAAACTAGGCTCTATGGTTCCTGTCTACAGTAGAGGTGCTGTTGTTGTACCTCTGACACTGTGATGATTGCACCCTACCTGCTACTATTGTCCTGGGCTGCTTCAGTTCAAGAGGGTAATCCTACAGAGCAGGATCAAGGGGTTAGCCGGCTAACTAGGAGTTAACTTGCCTAAATATTCTGAAGTATTACAGTGCAttttgggaagtattcagacaccttgactttcttcaaaatgttgttacattacagccttattctaaaatgtatgtttTTCATCACAATCTTCACAATACTCCACAATGGACAAAGTCAattcaggtttttagaaatacatCACTTATAGCAATACTTTGCTATGGGCCTTGAAATTGatctcgggtgcatcctgtttccattgatcatccttgagatgtttctacaacttgattggagtccacctgtggtaaatgcaattgattggacatgatttggaaaggcacacacctgtctctata
>XM_021573179.2
TTGAAAAGCACAGCGCTACCACGCTTCTCCAcacggtcacacacacatactggacacGCAGGAGTAAGAAACGCACACACAGTGAATCTGCTGAGGATACGATAGCTCCAGTCTGtctgTCCAATGGGCAGTGGTGCCAGTAGACTCTACAGCTCCCTGGCCCAGACCCTAGTCAGCACCAGCACCACTACCACCCCGCTGGCCCAGCACCCCTCCCCCTCACAGGGGTGTCACTCTCCCCCGGGGGGGCACCCCCTGCAGCTGCTGAGGGAGTGTGAGGAGGCTCTACGGGACAGGCCTCCTCGCCTCCTCAGAGCCTTCATCTGCCccggggagggagaggtggacaggGAGGAAGTGGACAACGATGCCACCCAGAGGACCATCAGAGTTATGCAGTGGAACATACTGGCTCAAGctctagGTGAAGGCATGGACAGTTTCGTCAACTGTCCCCTGGAAGCCCTGAACTGGGCGGAGCGTAAATACCTCATCCTAGAAGAGATCCTCACCTACCGGCCTCACATCCTGTGTCTACAGGAAGTCGACCACTACTACGACACCTTCCAGCCAATCCTGGCCAGCCTGGGTTACCGCGGCAACTTCTGCCCCAAGCCCTGGTCTCCGTGTTTGGATGTGGAGGGCAACAACGGTCCGGATGGATGTGCTCTGTTCTACGATGAAGCCCGGTTGGACTTGGTGGATAGTGTGAATGTCCGGCTGTGTGCCCTTTTCACACCCACCAACCAGGTGGCGGTTGTCACGACGCTGCGTTGCAGGGTGACAGGCCGGCGGCTGTGTGTTGCCGTGACGCACCTCAAAGCCCGGAGCGGCTGGGAATGCCTCCGTAGTGCCCAGGGTTCCGACCTTCTCCGGAACCTCACCACCCTCACCCAATCACCGGGGGGTCCTTCGGGTCCCATCGGCGTCACCCCAGACACCCCTCTCCTTGTCTGCGGCGACTTCAACGCTGTGCCTTCCGAGGACGTCTACCAGCGTTTCGCCTCGTCACCGTTGATCCTTGACTCCGCCTATAAACGGTTAAGCCGGGACGGGCTTTCGGAACCAGCCTATACCACGTGGAAGATCCGGCCGACGGGAGAGTGTTGCAACACATTGGATTATATCTGGTACTCTAGAGAAGCTTTCAGTGTGGACGCCGTGTTGGATATGCCTACAGAGGAACAGATTGGCCCCAACAGGCTTCCGTCGTACAACTACCCCTCCGATCACCTCTCGCTGGTGTGTGACTTCAGCTTTAAaaagcaggaggaggagtgaagaggatCATATGGACATTTGATTGACAGAACGAGGGATGGAGGGAACAGaacgagggatggagggaatagaagCGCCACTGTCCCTCTGAGTCCGAACCCATCTCTCTGGAGTATGATGactggagaacaggaggagggaaATAGCGAGGAGACTACCCGCTTGGTGTGAGCTTACTTTTCAGAAGTCATGTTATCGATTTAAAACACTGATTGAAGGAGAGACCGAGAGGAATGGACTGGACAGACTGCTGAAACTAGGCTCTATGGTTCCTGTCTACAGTAGAGGTGCTGTTGTTGTACCTCTGACACTGTGATGATTGCACCCTACCTGCTACTATTGTCCTGGGCTGCTTCAGTTCAAGAGGGTAATCCTACAGAGCAGGATCAAGGGGTTAGCCGGCTAACTAGGAGTTAACTTGCCTAAATATTCTGAAGTATTACAGTGCAttttgggaagtattcagacaccttgactttcttcaaaatgttgttacattacagccttattctaaaatgtatgtttTTCATCACAATCTTCACAATACTCCACAATGGACAAAGTCAattcaggtttttagaaatacatCACTTATAGCAATACTTTGCTATGGGCCTTGAAATTGatctcgggtgcatcctgtttccattgatcatccttgagatgtttctacaacttgattggagtccacctgtggtaaatgcaattgattggacatgatttggaaaggcacacacctgtctctata
>TU2666775
GTCGTACAACTACCCCTCCGATCACCTCTCGCTGGTGTGTGACTTCAGCTTTAAaaagcaggaggaggagtgaagaggatCATATGGACATTTGATTGACAGAACGAGGGATGGAGGGAAtagaagCGCCACTGTCCCTCTGAGTCCGAACCCATCTCTCTGGAGTATGATGactggagaacaggaggagggaaATAGCGAGGAGACTACCCGCTTGGTGTGAGCTTACTTTTCAGAAGTCATGTTATCGATTTAAAACACTGATTGAAGGAGAGACCGAGAGGAATGGACTGGACAGACTGCTGAAACTAGGCTCTATGGTTCCTGTCTACAGTAGAGGTGCTGTTGTTGTACCTCTGACACTGTGATGATTGCACCCTACCTGCTACTATTGTCCTGGGCTGCTTCAGTTCAAGAGGGTAATCCTACAGAGCAGGATCAAGGGGTTAGCCGGCTAACTAGGAGTTAACTTGCCTAAATATTCTGAAGTATTACAGTGCAttttgggaagtattcagacaccttgactttcttcaaaatgttgtt

Function

NR:

description
nocturnin-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036971895.1 False 2077 mRNA 0.53 4 2154735 2166885
XM_021573179.2 False 2029 mRNA 0.53 4 2154735 2176616
TU2666775 True 546 lncRNA 0.47 2 2154989 2155555
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118946763 LOC106591540 coding downstream 142254 2009540 ~ 2012481 (-)
LOC110511350 LOC106601386 coding downstream 201169 1934506 ~ 1953566 (-)
LOC118946762 LOC106591691 coding downstream 258027 1875707 ~ 1896708 (-)
LOC110518942 LOC106591068 coding downstream 728399 1418841 ~ 1426336 (-)
LOC110513025 exosc9 coding downstream 761019 1385260 ~ 1393716 (-)
LOC118946770 NA coding upstream 62346 2238654 ~ 2239683 (-)
G2331593 NA non-coding downstream 1118 2153270 ~ 2153617 (-)
G2331600 NA non-coding downstream 1945 2150889 ~ 2152790 (-)
G2331557 LOC106610549 non-coding downstream 5781 2088552 ~ 2148954 (-)
G2331584 NA non-coding downstream 44357 2108902 ~ 2110378 (-)
G2331582 NA non-coding downstream 48239 2105352 ~ 2106496 (-)
G2331606 NA non-coding upstream 4333 2180949 ~ 2181359 (-)
G2331612 NA non-coding upstream 38650 2215266 ~ 2216876 (-)
G2331613 NA non-coding upstream 41885 2218501 ~ 2219150 (-)
G2331616 NA non-coding upstream 45991 2222607 ~ 2223539 (-)
G2331615 NA non-coding upstream 48107 2224723 ~ 2225809 (-)
G2331554 LOC106601385 other downstream 115667 2037887 ~ 2039068 (-)
G2331536 LOC106601386 other downstream 161420 1951097 ~ 1993315 (-)
G2331305 NA other downstream 729656 1225408 ~ 1425079 (-)
LOC110513705 exosc9 other downstream 952749 1192764 ~ 1202030 (-)
G2331771 NA other upstream 365426 2542042 ~ 2544584 (-)
G2331942 LOC106602138 other upstream 630356 2755110 ~ 2809111 (-)
G2331580 NA non-coding downstream 50317 2103148 ~ 2104672 (-)
G2331601 NA non-coding upstream 13390 2168945 ~ 2169172 (-)
G2331602 NA non-coding upstream 14724 2170279 ~ 2172050 (-)

Expression

LOC110497191(LOC106597766) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 12.
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LOC110497191(LOC106597766) Expression in each Bioproject

Bar chart with 21 bars.
LOC110497191(LOC106597766) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 75.
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Co-expression Network