XLOC_004209 (si:cabz01069582.1)


Basic Information

Item Value
gene id XLOC_004209
gene name si:cabz01069582.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 31144720 ~ 31146808 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008065
TGTGCGGTGAGCCCCGAGGAAGAATGAAAAGCTGTGGAATAATACAGTCAGCGTTTTACTATGTGAGATATTTTTGTAATCTTCCTTGTTAAGATGTGTCCATACTTTAccctttttatagttttatacttACTTAATATGCCTGACGAATCATTCGGCGAGATGTTCACTTCGATGATGAGCGTGAATCAGACTGTTTCTGCAGAAAGAAAACTCATCGATcacttaataatatatattgaacACGAAGCACAAAGACTGGAAGATATTAAAAGGTTCTTTTCGAGAGTCACATCATTGCATGATGGGATGTACAACAAGCCATCAGATCCCATAGCCAATCCAATTGCTGCATTCAAACTGGTCAAAAGACTTAAATCCGAATGGTTGAATGTTGTCCATAGCACTGAAGCTGAAGAAAACATTAAAGTCCTTAGGGAGGACTACAGGAGGATGGAAAGCAGTTTGCCCAATCTGGAGGACCTTCGGGGGGCGGCGCAAGGGCTGATGAGACTTCAGGATGTGTACAATCTGCGCGTAGAGAGCCTTGTGCGAGGTCACTTCCAGCAAATCACTGATCCTGTTGACTTTTACAAACTCCCTGTGTCCGATATGCTCTCTGGGGATGATTGCTTTCTTGTTGGAAAG

Function

symbol description
si:cabz01069582.1 Predicted to enable oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen and procollagen-proline 4-dioxygenase activity. Predicted to be located in endoplasmic reticulum.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000105349

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008065 True 648 mRNA 0.42 3 31144720 31146808

Neighbor

gene id symbol gene type direction distance location
XLOC_004208 ier2b coding downstream 105187 31038409 ~ 31039533 (-)
XLOC_004207 zgc:153665 coding downstream 508557 30626768 ~ 30636163 (-)
XLOC_004206 slc8a1a coding downstream 532554 30535943 ~ 30612166 (-)
XLOC_004205 map4k3a coding downstream 635869 30365668 ~ 30508851 (-)
XLOC_004204 pecr coding downstream 779873 30355442 ~ 30364847 (-)
XLOC_004210 si:dkey-238i5.3 coding upstream 21889 31168697 ~ 31172276 (-)
XLOC_004211 NA coding upstream 53411 31200219 ~ 31202839 (-)
XLOC_004212 NA coding upstream 58117 31204925 ~ 31211308 (-)
XLOC_004213 nacc1b coding upstream 72148 31218956 ~ 31234584 (-)
XLOC_004214 man2b1 coding upstream 111308 31258116 ~ 31276080 (-)
XLOC_004063 CR854846.1 misc downstream 15017042 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 18453029 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 18522953 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 18553424 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 18631458 12512966 ~ 12513262 (-)
XLOC_004200 CR318645.1 non-coding downstream 1043463 30101142 ~ 30101257 (-)
XLOC_004198 CU652893.1 non-coding downstream 1182819 29961114 ~ 29961901 (-)
XLOC_004193 NA non-coding downstream 1407473 29734578 ~ 29737247 (-)
XLOC_004190 NA non-coding downstream 1599731 29537982 ~ 29544989 (-)
XLOC_004188 NA non-coding downstream 1824801 29099927 ~ 29319919 (-)
XLOC_004216 NA non-coding upstream 1003410 32150218 ~ 32157526 (-)
XLOC_004217 NA non-coding upstream 1219104 32365912 ~ 32391388 (-)
XLOC_004218 NA non-coding upstream 1310508 32457316 ~ 32563722 (-)

Expression


Co-expression Network