XLOC_000421


Basic Information

Item Value
gene id XLOC_000421
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 35896392 ~ 35898437 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003088
ttgtttttTGATAATGAAACACTTTAATTGAATCTTCCAGTAGAGACTTGATATGGAATAAAACTGCTTTCTGAGAGTACAGGTAAGCAAGAACAGCACGAAAAAAAAGGGACAGAGACGAGAAGCCACTTAAGAAAGTGCAAATATGAAGGAACAACATTATATATTTtcttcaaaaaatacaaaaatgtgtacattttaacAGTGGATGGGATTTCACTatggataaaaaaaatcttagaggAAGTTAATCAAAAATTAACAATTTCTTTTAACAAAACAATATCACTAGTGCCATTTAAATCTTAGTCAacacaaaagaaatcagtttacTCTAAAAATGCACAGGCATTATGTAAGCTTTTCCTCCTGCTTTTCTAAAGGTGTTTTATGAAACATATTCGTGCCATTTCAGAATAAAAGTAACAAGGACGTTCTTCTGTGCAGCTCAGTGGTGAGTCCACAATACTGTACATGGACAAAGAAAACGATGCCTGCTTCTGCTCTCATTTGTAGACATCAAACTTACAATCCCGGGGATCAAACCACACTTGCAAaacaaccaacaacaacaaaaaaaacagactgcacaacactttccttactaataatAAGTACATTTACACACCCACTTTTAAAATCAGTCGAACGCAACTGTGATGAAAGTAGCGCAACATTTGCACGAGTTCCCTACCCACTACTTACATGCCCAACTCCCCATACATTTATCCCATTCAACGGTTTTCGTATTCAAATATATGCATTTTTCATTCTACATTAgacatttttgtctgtttttgctACATGTTTTTCTCCTTTCCAGCTGTGAGAAATGTTGCATTAATAACCTCGTTATCCTTCTCACAGCTTCATGCCGCTCAGTTCACTTAAAGCATTATAATTCTGCACAAGATTTATGTTGTGGTCTTTCAGACGTGTTCACGCTACTCTACTCTGTACAACACTGTTCTAGTCTCTAAGCTAGGATGCAGATCTTTTTTTGTCAATGGAATACTGATTGTAAACTGGGAAAAGGATGGGAAATGCAAAAGAAatagaaagaaaacaaacaaattggctttaaaaaagtcaaactTCTTACGAACAAGACCAGAGGAGGATACTCGCCACAAGTATGATGCCTCATCATTAAACATGCTTGGTCACACAGAGTTGTCAAGTATCTTCCAGATTCTCACGGGCTGAAAACTGAGGACTCTTCAGCCAGATTCGATGACCCCCACCCTAACAAACTGCCTTCAAGTAGTACACAAAGCCAACCCTCTAGTCATCTCCCACCCCTCCCTTCAACCAATCAGCTTCTACATGTGAACCCAGACTGACAGGGTTGCATCAGCAGTTGCTTTATGGTCAGCTCCATCTAGGACACTGAAGAAATGGG

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0048731 system development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0021536 diencephalon development biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0032925 regulation of activin receptor signaling pathway biological_process
GO:0032926 negative regulation of activin receptor signaling pathway biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0006413 translational initiation biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0032501 multicellular organismal process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0030900 forebrain development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003088 True 1402 lncRNA 0.38 2 35896392 35898437

Neighbor

gene id symbol gene type direction distance location
XLOC_000420 si:ch211-194g2.4 coding upstream 28449 35862550 ~ 35867943 (+)
XLOC_000419 hhip coding upstream 60529 35790082 ~ 35835863 (+)
XLOC_000418 gab1 coding upstream 286733 35494837 ~ 35609659 (+)
XLOC_000417 usp38 coding upstream 405387 35473219 ~ 35491005 (+)
XLOC_000416 sc:d189 coding upstream 661692 35194454 ~ 35234700 (+)
XLOC_000422 BX276105.1 coding downstream 50832 35949269 ~ 35954313 (+)
XLOC_000423 mmaa coding downstream 57998 35956435 ~ 35970259 (+)
XLOC_000424 zgc:152968 coding downstream 87376 35985813 ~ 36002774 (+)
XLOC_000425 BX324156.1 coding downstream 255824 36154261 ~ 36154377 (+)
XLOC_000426 lsm6 coding downstream 296324 36194761 ~ 36204000 (+)
XLOC_000415 NA non-coding upstream 802880 35034294 ~ 35093512 (+)
XLOC_000414 NA non-coding upstream 1035335 34857368 ~ 34861057 (+)
XLOC_000408 NA non-coding upstream 1441945 34450659 ~ 34454447 (+)
XLOC_000407 CR848003.1 non-coding upstream 1496038 34400240 ~ 34400354 (+)
XLOC_000403 dre-mir-734 non-coding upstream 1773420 34122880 ~ 34122972 (+)
XLOC_000431 NA non-coding downstream 1067563 36966000 ~ 36966282 (+)
XLOC_000432 FO704615.1 non-coding downstream 1225205 37123642 ~ 37123772 (+)
XLOC_000436 NA non-coding downstream 1692821 37591258 ~ 37638367 (+)
XLOC_000439 NA non-coding downstream 1934910 37833347 ~ 37834392 (+)

Expression


Co-expression Network