XLOC_004211


Basic Information

Item Value
gene id XLOC_004211
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 31200219 ~ 31202839 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008812
TGCATATACTTTATTCGGGAACCATTTGGATTTATCAAGACGCCAAAATAAAGCCAAAAGTCTTATATAATACAAATGCTTACAAAAACTAATGACACGGGCATTAGAACTGGACTGAAATGCAGTCATTCATGTAGGCAGCAAATTTATTTCCTCTACAACTGAAAGAACATCAAACGAGTACCGAATTTCCCTAAAAGGACATGAAAGAGGTCATTCATTTTCATCCCTTGTTCCACTTTTTGATGGCAGACGTTGTATTTGACTTTTTAAGGCTCACAACGAAAATCTTATGCTCGGAGTTGCTAGGATACGTTATTGTattataaaatgacaataaacaatACTGAAATGAGTCGAGTTCAGCTAAAGCTGAAAGAGAGGAAAGCGTTGGTTTTGAACAATACATTCACCCACGGGCACCTGGAGTCCTTATACACTCAGATCTCAGAAAAACTCATTGGCACAGAGGATATGAGTACAAAATGTTCGTTAGCACACGATATTAGATCCGAGTTCTGGAGCACAAATATGAAGTAACAATCATAACTGAAGCTTTTGATTAGCTCTTTAGGGGATGCTGTCAGTTAGTGGGGGAGTTTACTTAAGAATGAAACTAAATTGCTGTTCATTTACCTTCCAGCTAGTCACACctattacattttgttttgtctgtgtgcttttttgactattaaaagtgctgatatttgaaaatgtcattttatgaatcaccaaaaaatgaaatcatcagcttaaaatctttttaaatgtaaaatgtgagtaaatcaaAAGCAAAGATCCATTTTTTGGTGAGCCTCTCCCCCTTAAAATAAAATGCGACTTCCAGAACATGCATGTTGCTGCTTTTACTGCATTTAAAAGACCAGTTAATTAGTGAAAATAGTAAAATGATGGAGAAGTATGGAATATCATTGTGACTTAATCCATCAAAATGCACAGTGTGTCCAAATGACTCTATACAAATCCGCCGCAATAACAATATACAGTAATCTTAAAAGCAATGCATAAAATCTGattttaaaatgagtaaaaatcCCAATACTTACAAGCAGATCTATGAAAATTGTCAGTGTGAGCAAATTTGACCATTTTTTGCAACCAATTATCCACGAGTTGACTCAAATGATGAGATTCATCCATGAATAAAAGAGCAAATGATAATTTAAAAAGTTCATGATTTAATTTCCATCAGATAgaaaaggcatagttcacccaaaatggaaaattctgtcatctttttaCTCACCTTTCATGTTCCAAACCCgtttgaacaaaaaaaagaagaggttttgaaaaatgttggaaacctgtaaccattaattttcatagtatttgtttttcctttttacccatttctaacattttttaaaatctctctTTTGGTACAACATAAAGAAATAACTCTTTGATTGTGATGGTGAGTAAATTTGAGTCAGTtcacacagaaaataaaaatgacctcATCTACATTTATTCTCCCtcgtattttttttaaaatgagagtttattattttctattgaacacaaaagaagatatttaaatgtattattattaaagatattaTAAACCAACATTCATAATAATGTTAGTTGCTGGGactcattaacttccatagtatgaaaaaaacaattactattgaagtcaatggttataggtttccaacatttttcaaaatatatcctcaaaaaagttttaaacaagtgaagtgtgagtaaataatgccaagaatgttcatttttgtgtgagctatccctttaacttGGGTATGGCCAGCTGGAAATCTAGAGGGCGCTATAAGCCAGCATTCACTCTGatatgggggaaaaaaagagaacattctgttgtttactcacctttcacttaTTTCAAACTTGTGTTAATTGATATTTTTctataaacacaaaagaagagattttgaaaaatgttggaaacctgtaactattgactttcataatatttatttttcctatgaaggtaattttaaatgtttacccatttctaacattcttcaaaaccaGTTTTttggttcaacagaaaaaagtaaCTCTTTGAGGGTGAGGCTGAGTACATTTTAACTTTGTTCACCCAAATAATAAAATGACCTCTTCTACATtcattctccctcatgtggttttaaatgagagttaattattttttttattaaacacaaaagaagatatttaaacatattattatttgAGATATTATAAACCAACATTTATAAGTATGTTTGTTGTTGGgacttattgacttccatagtatgaaaaaaatacaatggaaatcaatggttacagaaaaaagtaaCTCTTTAAAGgtgatggtg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008812 True 2345 lncRNA 0.32 2 31200219 31202839

Neighbor

gene id symbol gene type direction distance location
XLOC_004210 si:dkey-238i5.3 coding downstream 27943 31168697 ~ 31172276 (-)
XLOC_004209 si:cabz01069582.1 coding downstream 53411 31144720 ~ 31146808 (-)
XLOC_004208 ier2b coding downstream 160686 31038409 ~ 31039533 (-)
XLOC_004207 zgc:153665 coding downstream 564056 30626768 ~ 30636163 (-)
XLOC_004206 slc8a1a coding downstream 588053 30535943 ~ 30612166 (-)
XLOC_004212 NA coding upstream 2086 31204925 ~ 31211308 (-)
XLOC_004213 nacc1b coding upstream 16117 31218956 ~ 31234584 (-)
XLOC_004214 man2b1 coding upstream 55277 31258116 ~ 31276080 (-)
XLOC_004215 AL844172.2 coding upstream 666181 31869020 ~ 31872628 (-)
XLOC_004216 NA coding upstream 947379 32150218 ~ 32157526 (-)
XLOC_004063 CR854846.1 misc downstream 15072541 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 18508528 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 18578452 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 18608923 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 18686957 12512966 ~ 12513262 (-)
XLOC_004200 CR318645.1 non-coding downstream 1098962 30101142 ~ 30101257 (-)
XLOC_004198 CU652893.1 non-coding downstream 1238318 29961114 ~ 29961901 (-)
XLOC_004193 NA non-coding downstream 1462972 29734578 ~ 29737247 (-)
XLOC_004190 NA non-coding downstream 1655230 29537982 ~ 29544989 (-)
XLOC_004188 NA non-coding downstream 1880300 29099927 ~ 29319919 (-)
XLOC_004217 NA non-coding upstream 1163073 32365912 ~ 32391388 (-)
XLOC_004218 NA non-coding upstream 1254477 32457316 ~ 32563722 (-)
XLOC_004219 NA non-coding upstream 1269944 32472783 ~ 32473383 (-)

Expression


Co-expression Network