G2331942 (LOC106602138)


Basic Information

Item Value
gene id G2331942
gene name LOC106602138
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493658.1
NCBI id JAAXML020000857.1
chromosome length 2864942
location 2755110 ~ 2809111 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2667253
GTAATGGGGACTTTGCCACGTCATTGACTTCAGCTTTATTATGTCCAATCCGTTGGTCACAATGAAAAGTGATACACTGACAggtaccacacagacacacaggctacATCCCAAACTGATACACTGACAggtaccacacagacacacaggctacATCCCAAACTGATACACTGACAGgtaccatacagacacacaggctgcatcccaaacggaaccacattctctagatAGTGTCTAGGACTCTAGGCTTCTAGGGAAGAGGATGCCATATTGGACGTGGGACACACTCTGCCGACCTTACACCACGGAGACTTGTGAttgacacacacactttcaattaCCAATAATTAAATATTTAGCATTTacacaaaaatacaaataatgtcGGAGTAGAAAAAACTACATGGATTGATAATATCTGATCGATGCAGTGGaacatataaaaaaatatttgtttttcatttgttttacTTCTGTACAAACATACATATAaatatagatagaaagagagagtataAAAGTGTGTATTTTTAAAATACAAAGGGGGGTTTGTACACCACAGTTATTGACGTTCACATGACAAGGAGACATATGGCAAAACATTTTGAGGGCATCTCTTTTCACAGTAACGTGGGGCTGTACATTATAAATGCAAACGCTGTTCATAGTAATTTCTCTCCTAGTTCTTTCACATTGTTATAAACATGAAGGAGTTTAGAAATGTGTCTCTGGGCGTTGGTTCAAGCCTTGTTGATCTGTGGCCCAACCACAACGTCACAAACAACGTTGAAACGTCTCACCAACGTTTAAAATGTCTTAAGATCCCAGAAAAACCATCAGTGCTATAGGATCAGTTCATCTTCCTGTTTAATGGTCCTTGGCCTCTCATTgggcactctgtctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctgtctctctctctctctctctctctctctctctctctctctctctctctctctcggagtgcatgctgggagtgagtcgtcaag
>TU2667252
GTGTCTCTGGGCGTTGGTTCAAGCCTTGTTGATCTGTGGCCCAACCACAACGTCACAAACAACGTTGAAACGTCTCACCAACGTTTAAAATGTCTTAAGATCCCAGAAAAACCATCAGTGCTATAGGATCAGTTCATCTTCCTGTTTAATGGTCCTTGGCCTCTCATTgggcactctgtctctctctctctctctctctctctctgtctctctctctctgtctctctctctctctctgtctctctctctctctctctctctgtctctctctctgtctctctctctctctctctctctccgtctctctctctctctctctctctctctctctccctctctctctctctctctctctctc
>TU2667258
GTGTCTCTGGGCGTTGGTTCAAGCCTTGTTGATCTGTGGCCCAACCACAACGTCACAAACAACGTTGAAACGTCTCACCAACGTTTAAAATGTCTTAAGATCCCAGAAAAACCATCAGTGCTATAGGATCAGTTCATCTTCCTGTTTAATGGTCCTTGGCCTCTCATTgggcactctgtctctctctctctctctctctctctctgtctctctctctgtctctctctctctctctgtctctctctctctctctctctctgtctctctctctgtctctctctctctctctctctctccgtctctctctctctctctctctctctctctctccctctctctctctctctctctctctc
>TU2667249
GTAATGGGGACTTTGCCACGTCATTGACTTCAGCTTTATTATGTCCAATCCGTTGGTCACAATGAAAAGTGATACACTGACAggtaccacacagacacacaggctacATCCCAAACTGATACACTGACAggtaccacacagacacacaggctacATCCCAAACTGATACACTGACAGgtaccatacagacacacaggctgcatcccaaacggaaccacattctctagatAGTGTCTAGGACTCTAGGCTTCTAGGGAAGAGGATGCCATATTGGACGTGGGACACACTCTGCCGACCTTACACCACGGAGACTTGTGAttgacacacacactttcaattaCCAATAATTAAATATTTAGCATTTacacaaaaatacaaataatgtcGGAGTAGAAAAAACTACATGGATTGATAATATCTGATCGATGCAGTGGaacatataaaaaaatatttgtttttcatttgttttacTTCTGTACAAACATACATATAaatatagatagaaagagagagtataAAAGTGTGTATTTTTAAAATACAAAGGGGGGTTTGTACACCACAGTTATTGACGTTCACATGACAAGGAGACATATGGCAAAACATTTTGAGGGCATCTCTTTTCACAGTAACGTGGGGCTGTACATTATAAATGCAAACGCTGTTCATAGTAATTTCTCTCCTAGTTCTTTCACATTGTTATAAACATGAAGGAGTTTAGAAATGTGTCTCTGGGCGTTGGTTCAAGCCTTGTTGATCTGTGGCCCAACCACAACGTCACAAACAACGTTGAAACGTCTCACCAACGTTTAAAATGTCTTAAGATCCCAGAAAAACCATCAGTGCTATAGGATCAGTTCATCTTCCTGTTTAATGGTCCTTGGCCTCTCATTgggcactctgtctctctctctctctctctctctctctctctctctgtctctctctctctctctccgtctctctctctctctctctctgtctctctctctccgtctctctctctctctccgtctctcgctctctccatctctcgctctctctccatctctctctctctctctgtctctctctctgtctctctttttctttccatctctctctctctccccgtctctctctctccatctctctctctccatctctctctctctctccgtctctctctaggTCTGCCTGGCGTCCTGTAGTAGTTTATTAATCTCGGTGACCAACTCACTAGCGTCCATCATGTCATCGTGTCTGTCACTGCGTTGCTTCCTCCCCATCCCTAGCATctccagctcatcctcctcataGTTTTCTGGGATCTCCTCCATGGCAGGCAGCCATCTTAGGTGTGGTGGCTggttggaggaggaagaggtggtggACGAGGCGGCCAAGTTGGTGAGGTTGTTGGTGTTGTGACTTGATGGGCTTTGGCCGACAGCTCCGCCTCCGGGGTTCAGATAGTGGGTGTTAGCCGCCCACGCCGCCACGCCTGCCGGGTAGGAGGCGGGGCCTTTGGTGTTGTTGCCGCCCGTTAACAGCACCTTGGCGTGGCCACCCTTTCCACTTCCTCGTTCCGTTGCCGCGGCGGCAACGTTGTTTTCGCTGCACTCGGCGTACGAATCCAGTGACGGAGGGAGCAGGCGCCGGAAGATTCCGTTCATCTCCGAAAGCAAGGAACCCCCTTCACTGACCCCTTCCTCCTCAGAACTCCCGGGCTCCTTCCCGAAGGTGGAGAAGCTCTTCCTGCGCTCCGAGGAGTCGATGGAAGCCTGGTCGTCATCGAGGAGGTGGGGGGGCTGGTTAGAGGACTCCTCCCCTGGGATAAACATGTTGCTACGGtagtcagaggaa
>TU2667251
GTGTCTCTGGGCGTTGGTTCAAGCCTTGTTGATCTGTGGCCCAACCACAACGTCACAAACAACGTTGAAACGTCTCACCAACGTTTAAAATGTCTTAAGATCCCAGAAAAACCATCAGTGCTATAGGATCAGTTCATCTTCCTGTTTAATGGTCCTTGGCCTCTCATTgggcactctgtctctctctctctctctctctctctctctctctctctctctctctctgtctctctctctctctctccgtctctctctctctctctctctgtctctctctctccgtctctctctctctctccgtctctcgctctctccatctctcgctctctctccatctctctctctctctctgtctctctctctgtctctctttttctttccatctctctctctctccccgtctctctctctccatctctctctctccatctctctctctctctccgtctctctctaggTCTGCCTGGCGTCCTGTAGTAGTTTATTAATCTCGGTGACCAACTCACTAGCGTCCATCATGTCATCGTGTCTGTCACTGCGTTGCTTCCTCCCCATCCCTAGCATctccagctcatcctcctcataGTTTTCTGGGATCTCCTCCATGGCAGGCAGCCATCTTAGGTGTGGTGGCTggttggaggaggaagaggtggtggACGAGGCGGCCAAGTTGGTGAGGTTGTTGGTGTTGTGACTTGATGGGCTTTGGCCGACAGCTCCGCCTCCGGGGTTCAGATAGTGGGTGTTAGCCGCCCACGCCGCCACGCCTGCCGGGTAGGAGGCGGGGCCTTTGGTGTTGTTGCCGCCCGTTAACAGCACCTTGGCGTGGCCACCCTTTCCACTTCCTCGTTCCGTTGCCGCGGCGGCAACGTTGTTTTCGCTGCACTCGGCGTACGAATCCAGTGACGGAGGGAGCAGGCGCCGGAAGATTCCGTTCATCTCCGAAAGCAAGGAACCCCCTTCACTGACCCCTTCCTCCTCAGAACTCCCGGGCTCCTTCCCGAAGGTGGAGAAGCTCTTCCTGCGCTCCGAGGAGTCGATGGAAGCCTGGTCGTCATCGAGGAGGTGGGGGGGCTGGTTAGAGGACTCCTCCCCTGGGATAAACATGTTGCTACGGtagtcagaggaa
>TU2667254
GTGTCTCTGGGCGTTGGTTCAAGCCTTGTTGATCTGTGGCCCAACCACAACGTCACAAACAACGTTGAAACGTCTCACCAACGTTTAAAATGTCTTAAGATCCCAGAAAAACCATCAGTGCTATAGGATCAGTTCATCTTCCTGTTTAATGGTCCTTGGCCTCTCATTgggcactctgtctctctctctctctctctctctctctgtctctctctctctctctctctctctctctctctctctctctctctgtctctctctctctctctccgtctctctctctctctctctctgtctctctctctccgtctctctctctctctccgtctctcgctctctccatctctcgctctctctccatctctctctctctctctgtctctctctctgtctctctttttctttccatctctctctctctccccgtctctctctctccatctctctctctccatctctctctctctctccgtctctctctaggTCTGCCTGGCGTCCTGTAGTAGTTTATTAATCTCGGTGACCAACTCACTAGCGTCCATCATGTCATCGTGTCTGTCACTGCGTTGCTTCCTCCCCATCCCTAGCATctccagctcatcctcctcataGTTTTCTGGGATCTCCTCCATGGCAGGCAGCCATCTTAGGTGTGGTGGCTggttggaggaggaagaggtggtggACGAGGCGGCCAAGTTGGTGAGGTTGTTGGTGTTGTGACTTGATGGGCTTTGGCCGACAGCTCCGCCTCCGGGGTTCAGATAGTGGGTGTTAGCCGCCCACGCCGCCACGCCTGCCGGGTAGGAGGCGGGGCCTTTGGTGTTGTTGCCGCCCGTTAACAGCACCTTGGCGTGGCCACCCTTTCCACTTCCTCGTTCCGTTGCCGCGGCGGCAACGTTGTTTTCGCTGCACTCGGCGTACGAATCCAGTGACGGAGGGAGCAGGCGCCGGAAGATTCCGTTCATCTCCGAAAGCAAGGAACCCCCTTCACTGACCCCTTCCTCCTCAGAACTCCCGGGCTCCTTCCCGAAGGTGGAGAAGCTCTTCCTGCGCTCCGAGGAGTCGATGGAAGCCTGGTCGTCATCGAGGAGGTGGGGGGGCTGGTTAGAGGACTCCTCCCCTGGGATAAACATGTTGCTACGGtagtcagaggaa
>TU2667255
GTGTCTCTGGGCGTTGGTTCAAGCCTTGTTGATCTGTGGCCCAACCACAACGTCACAAACAACGTTGAAACGTCTCACCAACGTTTAAAATGTCTTAAGATCCCAGAAAAACCATCAGTGCTATAGGATCAGTTCATCTTCCTGTTTAATGGTCCTTGGCCTCTCATTgggcactctgtctctctctctctctctctctctctctgtctctctctccgtctctctctctctctctctctctctctctctgtctctctctctctctctccgtctctctctctctctctctctgtctctctctctccgtctctctctctctctccgtctctcgctctctccatctctcgctctctctccatctctctctctctctctgtctctctctctgtctctctttttctttccatctctctctctctccccgtctctctctctccatctctctctctccatctctctctctctctccgtctctctctaggTCTGCCTGGCGTCCTGTAGTAGTTTATTAATCTCGGTGACCAACTCACTAGCGTCCATCATGTCATCGTGTCTGTCACTGCGTTGCTTCCTCCCCATCCCTAGCATctccagctcatcctcctcataGTTTTCTGGGATCTCCTCCATGGCAGGCAGCCATCTTAGGTGTGGTGGCTggttggaggaggaagaggtggtggACGAGGCGGCCAAGTTGGTGAGGTTGTTGGTGTTGTGACTTGATGGGCTTTGGCCGACAGCTCCGCCTCCGGGGTTCAGATAGTGGGTGTTAGCCGCCCACGCCGCCACGCCTGCCGGGTAGGAGGCGGGGCCTTTGGTGTTGTTGCCGCCCGTTAACAGCACCTTGGCGTGGCCACCCTTTCCACTTCCTCGTTCCGTTGCCGCGGCGGCAACGTTGTTTTCGCTGCACTCGGCGTACGAATCCAGTGACGGAGGGAGCAGGCGCCGGAAGATTCCGTTCATCTCCGAAAGCAAGGAACCCCCTTCACTGACCCCTTCCTCCTCAGAACTCCCGGGCTCCTTCCCGAAGGTGGAGAAGCTCTTCCTGCGCTCCGAGGAGTCGATGGAAGCCTGGTCGTCATCGAGGAGGTGGGGGGGCTGGTTAGAGGACTCCTCCCCTGGGATAAACATGTTGCTACGGtagtcagaggaa
>TU2667256
GTGTCTCTGGGCGTTGGTTCAAGCCTTGTTGATCTGTGGCCCAACCACAACGTCACAAACAACGTTGAAACGTCTCACCAACGTTTAAAATGTCTTAAGATCCCAGAAAAACCATCAGTGCTATAGGATCAGTTCATCTTCCTGTTTAATGGTCCTTGGCCTCTCATTgggcactctgtctctctctctctctctctctctctccgtctctctctctctctctctctgtctctctctctccgtctctctctctctctccgtctctcgctctctccatctctcgctctctctccatctctctctctctctctgtctctctctctgtctctctttttctttccatctctctctctctccccgtctctctctctccatctctctctctccatctctctctctctctccgtctctctctaggTCTGCCTGGCGTCCTGTAGTAGTTTATTAATCTCGGTGACCAACTCACTAGCGTCCATCATGTCATCGTGTCTGTCACTGCGTTGCTTCCTCCCCATCCCTAGCATctccagctcatcctcctcataGTTTTCTGGGATCTCCTCCATGGCAGGCAGCCATCTTAGGTGTGGTGGCTggttggaggaggaagaggtggtggACGAGGCGGCCAAGTTGGTGAGGTTGTTGGTGTTGTGACTTGATGGGCTTTGGCCGACAGCTCCGCCTCCGGGGTTCAGATAGTGGGTGTTAGCCGCCCACGCCGCCACGCCTGCCGGGTAGGAGGCGGGGCCTTTGGTGTTGTTGCCGCCCGTTAACAGCACCTTGGCGTGGCCACCCTTTCCACTTCCTCGTTCCGTTGCCGCGGCGGCAACGTTGTTTTCGCTGCACTCGGCGTACGAATCCAGTGACGGAGGGAGCAGGCGCCGGAAGATTCCGTTCATCTCCGAAAGCAAGGAACCCCCTTCACTGACCCCTTCCTCCTCAGAACTCCCGGGCTCCTTCCCGAAGGTGGAGAAGCTCTTCCTGCGCTCCGAGGAGTCGATGGAAGCCTGGTCGTCATCGAGGAGGTGGGGGGGCTGGTTAGAGGACTCCTCCCCTGGGATAAACATGTTGCTACGGtagtcagaggaa

Function

NR:

description
protocadherin-18-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2667253 False 1047 lncRNA 0.41 2 2755110 2809111
TU2667252 False 358 lncRNA 0.49 3 2780339 2808389
TU2667258 False 356 lncRNA 0.49 3 2780339 2808389
TU2667249 False 1842 lncRNA 0.49 2 2806972 2809111
TU2667251 False 1132 TUCP 0.55 2 2806972 2808389
TU2667254 False 1158 TUCP 0.55 2 2806972 2808389
TU2667255 False 1156 TUCP 0.55 2 2806972 2808389
TU2667256 True 1092 TUCP 0.55 2 2806972 2808389

Neighbor

gene id symbol gene type direction distance location
LOC118946770 NA coding downstream 515503 2238654 ~ 2239683 (-)
LOC110497191 LOC106597766 coding downstream 578494 2154735 ~ 2176616 (-)
LOC118946763 LOC106591540 coding downstream 742629 2009540 ~ 2012481 (-)
LOC110511350 LOC106601386 coding downstream 801544 1934506 ~ 1953566 (-)
LOC118946762 LOC106591691 coding downstream 858402 1875707 ~ 1896708 (-)
G2331938 NA non-coding downstream 15208 2733329 ~ 2739902 (-)
G2331908 NA non-coding downstream 39269 2714532 ~ 2715841 (-)
G2331896 NA non-coding downstream 45917 2693654 ~ 2709193 (-)
G2331885 NA non-coding downstream 67109 2687774 ~ 2688001 (-)
G2331877 NA non-coding downstream 79440 2674164 ~ 2675670 (-)
G2331969 NA non-coding upstream 15947 2825058 ~ 2825337 (-)
G2331971 NA non-coding upstream 17103 2826214 ~ 2826580 (-)
G2331974 NA non-coding upstream 23255 2832366 ~ 2832596 (-)
G2331771 NA other downstream 210526 2542042 ~ 2544584 (-)
G2331554 LOC106601385 other downstream 716042 2037887 ~ 2039068 (-)
G2331536 LOC106601386 other downstream 761795 1951097 ~ 1993315 (-)
G2331305 NA other downstream 1330031 1225408 ~ 1425079 (-)
G2331950 NA non-coding downstream 24765 2781594 ~ 2782207 (-)

Expression

G2331942(LOC106602138) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 25.
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G2331942(LOC106602138) Expression in each Bioproject

Bar chart with 20 bars.
G2331942(LOC106602138) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
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Co-expression Network