LOC110516484 (spock3)


Basic Information

Item Value
gene id LOC110516484
gene name spock3
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493659.1
NCBI id JAAXML020000263.1
chromosome length 2745910
location 21703 ~ 44948 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036972027.1
GAGCCAGGTACATGGAATCCTGGGAAAGCGTTTGATCAAGgtctgaaCCCAGATAACCCCTGTCTGAAGGTCAAGTGTAGCGGTCACAAAGTGTGTGTTGCAGACGACGACCAGACTGCTGCTTGTGTTAGCCAGCGGAGGGTCAGtgtgAAGGAACCGGGCCTGTCTCTGAGTCCAGGGTCCAAATGCAGACGCTGTCCAGTGGTCCGTCCCTCTCCTGTGTGTGGTACTGACGGACACAGCTACTCAACCAAGtgTAAGTTGGAGTATCAGGCATGTATCTCAGGGAAGCAGATCTCAGTCCAGTGTTCTGGCCAGTGTCCCTGTCCTGCTGTCCTTCCTGAATACAGCACAGcaggacagacagAGTTCAGCTCGGGGGCGGGGCCTATCTGTAAGGATCCTCTTGGTTGGATGTTCTCCCGCCTCGACACAAACTTTGACCTCCAGCTGGACCAATCAGAGCTCAGCAGGCTGGGGCTGGACAGGAAGGAAGGCTGCTCCGATGCACTCTTCACTTCCTGTGACACACCCACTGACACACACCCCGACACACACCCCgacacactcctcctctccagcgcagagTGGTGCACCTGCTTCCAGAGATACACAGactCCCCCTGTTGGTCTGAACTGACCAGTATTAACAAGAAACAGGCTACGGAGAAGCTACCGGGTCAGTACCTGCCAGTGTGTGACGCAGAGGGCTACTACCGGTCCCACCAGTGCCACGGCAGCAGCGGACAGTGCTGGTGTGTCGATCGCTATGGCAACGAGGTCGCAGGGTCACGGACCCACGGAGCAGCAGACTGTGGGGTGGTGTTGGAATCATCTGGAGACCAGGGCAGCGGAGACTCTCTCTTCTCCGACGACGACTATgacgatgatgaagatgatgcCTTCGTCCTGAGCGACCAGATCGATGATGAAGATGACGAAGACGAGGACAACTATGACGGAGAGGAAAGATATCTGTCGTAACTCCGTCACTCTGCACTTTGCCAGGGGACTTCAGCAGCAAGAATAGTTGCTAGGCGACCTCGTCACCGCTAACAGACTAAagacatttttctctctctcttctgtgtctCAAATGTCCCCCTATACCCTAGTCAGTTCCCCAGGGCCCATTGGGTGCTGGGGGAAGGCAGTTCACTACATAGTGTACAGGGCACCATTTGGGATGGCCCactctgtgtttgttgtctgttccTAACTTAAGGTGGACTCTGCAATTTGACATCATTGTacaaattggggggggggggggggacgacttCCTGTAAATAACAGACGTcatcaacaaaaaacaacaacaacaacggaaTTGTGATCTATGGGTCCCTTTGTGGTGTTTCCGCATCAGGAAAATCACAGCATAGCCGTCTTGGCAGATTAGAATTCTGTTGTTGGTGTTGTCCCGTAAGCAGGAAGTGACCTTGCTGTGTATGATGTCATAATGACTAGCCCACCTTTCATAGCTGGTAAACGTTTGTTTATGTTTTCACTTTCTCTGCCGTCTAACTTTTGAATGGCCTGCGTGGCTGTAACTCCGGGGAGTCGTCCAATCAGCGAGAACTTCAACGACCAATCAGAGTTTAGAGACTAGTTTATCAACAGCCAATCACAAGCTGTGGATGTAGTCACATGTGCAATGAGCCCTTTCCTTATTGGACAATCAgcgtgtcctctcctctctcttcctctcctccctcctatctcctctcctccttcctatatcctcttttcctctcctccctcctatctcctctcctctcttcctctcctccctcctatctcctctcttc
>TU2667306
agtgtgAAGGAACCGGGCCTGTCTCTGAGTCCAGGGTCCAAATGCAGACGCTGTCCAGTGGTCCGTCCCTCTCCTGTGTGTGGTACTGACGGACACAGCTACTCAACCAAGtgTAAGTTGGAGTATCAGGCATGTATCTCAGGGAAGCAGATCTCAGTCCAGTGTTCTGGCCAGTGTCCCTGTCCTGCTGTCCTTCCTGAATACAGCACAGcaggacagacagagtgcagtGAGTCAGACATAAAGGAGGTTGTGGGTCGGTTAAGGGACTGGTTCAGAGTTCTACTTGAGAACGGAAACAACAAGAAACTGAAGACACACATACCTCAGAAAAACAAGTTCAGCTCGGGGGCGGGGCCTATCTGTAAGGATCCTCTTGGTTGGATGTTCTCCCGCCTCGACACAAACTTTGACCTCCAGCTGGACCAATCAGAGCTCAGCAGGCTGGGGCTGGACAGGAAGGAAGGCTGCTCCGATGCACTCTTCACTTCCTGTGACACACCCACTGACACACACCCCGACACACACCCCgacacactcctcctctccagcgcagagTGGTGCACCTGCTTCCAGAGATACACAGactCCCCCTGTTGGTCTGAACTGACCAGTATTAACAAGAAACAGGCTACGGAGAAGCTACCGGGTCAGTACCTGCCAGTGTGTGACGCAGAGGGCTACTACCGGTCCCACCAGTGCCACGGCAGCAGCGGACAGTGCTGGTGTGTCGATCGCTATGGCAACGAGGTCGCAGGGTCACGGACCCACGGAGCAGCAGACTGTGG

Function

symbol description
spock3 Predicted to enable calcium ion binding activity. Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Is expressed in cardiovascular system; nervous system; and neural tube. Orthologous to human SPOCK3 (SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3).

NR:

description
PREDICTED: testican-3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036972027.1 False 1811 mRNA 0.52 8 21703 44948
TU2667306 True 788 TUCP 0.56 6 24649 41318

Neighbor

gene id symbol gene type direction distance location
LOC118947009 NA coding downstream 92 45040 ~ 47791 (+)
LOC118946999 med28 coding downstream 270288 315236 ~ 320283 (+)
LOC110519477 LOC105007586 coding downstream 332718 377666 ~ 410533 (+)
LOC110515074 NA coding downstream 370561 415509 ~ 469541 (+)
LOC118947011 uchl1 coding downstream 497542 542490 ~ 553415 (+)
G2331998 NA non-coding downstream 4568 49516 ~ 50164 (+)
G2332002 NA non-coding downstream 7760 52708 ~ 53040 (+)
G2332003 NA non-coding downstream 8416 53364 ~ 53600 (+)
G2332005 NA non-coding downstream 11604 56552 ~ 57012 (+)
G2332006 NA non-coding downstream 15015 59963 ~ 60922 (+)
G2332039 NA other downstream 97746 142694 ~ 144298 (+)
G2332063 NA other downstream 166175 211123 ~ 226248 (+)
G2332067 NA other downstream 183846 228794 ~ 230848 (+)
LOC110517278 LOC106596232 other downstream 510566 555508 ~ 648529 (+)

Expression


Co-expression Network