XLOC_004212


Basic Information

Item Value
gene id XLOC_004212
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 31204925 ~ 31211308 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008813
AAAATATATAATGAAGGAAGTTGTGAGTCTTTCACCAATTGGAGGAAAGAAAACTGAATTACAAAGTGATGGCTGAATGACGTCGAATGGCACATGGATCAGCGCCACCTGCTGTCAGACTTGACAATGGTAGTAAATAGAATctagtgtgcattattttcttcTCCTGGCCAATGAGGATTTGACTTGATCAATTCCAGTTctcattattgttttttattttataagccCCGACCAAAAGAATATGTACACAGATTTTTAAATGCTTCTGAACTGCCAACATCGAAGGAAATGTTATTGTGGATATACAGAACTAGAATAAATGGATGAGGTTTACTAATGTGACGATCAAAACAATCAGTACTTAATATGACACTTTATTAACAAATGGCCAAATTTGGGGATTCATGAATGGCTATCGGGAAGGAAGACAACCTAACATATTTAGAAAGTTTCACTCTTTACTATTGGATTTGAAATTGTACATTTGTCAATTAACAATGGATTGTCATTAAAATCCCCATTTCTGTATTACGTTTTTAGGgcaaaaatatctgcagatttcATATAAGGGTtatcaaaaatgtcaaatagaactGGGTGTTATTTGCTAAACTGTTACATAAAGTTGTATAAATTTTGCATGAGAGAGGGGGCtttatttttatcataatttatctttttttatctgaaaaagCACATTTTGCTTTTCTATAGAGGTCTTCAACAGCATCTTTTATGGTTAGGGTTCAACTACTAGGTGTCAATCTTACAGTCAAAAATAAAAAGGCTTAAAGATGTTAAGCTAGATTTTCTTTTCATTATACCATcaaaatgaatgatattttttatatacatggttaataaccttattttaaacaATATGGAATGTAATCATCAcatgtaaatacattaatatgGTAATATACACAATAGCAGGCTTAAAATGCAGCACTTTTACAGTATGTACAGGCGTCCGTTCTGCATCTCTGTAAGGTTATTTTTGCCTGAACTGAAGTTGAAGACCTCTGCTTTTGCTCCCTCTTTCTGCTTGACTGTTTCCATTGAGCTTCTATTAGATTTCTATTATGAGTATTTCTCAAATATACTGcatctgtttttgtttggtgtgtgTAAACATGCTTTTCAGATGTTCAACTTTTATTTGTCTCAGCATTTGCTAGGTTGCTTCATTTACAAAAACCGAAGGCAAGACACCACAGGTGAATAGGGTGTAAAACAATATGCATCACCAAAACTTCCAAATTATAATAGTTAAGAAGTTGTTTCAAACAAAGcgctaaaaacacattttaataaatcattttgcGTTGATATaatatcatacctgtcaaccctcctgttttttttcCGGGATTCTCCTGTACTTCTAcaattctatcccactatcatcctgtaaaggtattttcccgtatttcttctATATTTTTGATCTTTCCATGTCCGATCCTCTCCATACGCAAACCATaacgccgaaccaccaggggacaccCCTTGAATCTGTTTTatgctttcattttcttttggcatgaaagctcgttttttttttttttttcccgggattctcccataatttacagttctatcctgctattaTTCCGTagaggtattttcccgtattttcaatctttctatgaagggtgacCATAAACATCAAAGTGCTGATTCACCTTATATGCAaaccataccgccgaaccaccaagGGATACCCCtggctcttaaatgtgaatctgttctgtgctttcattttatttagacatGGAAACatgttgaaataaatataaaaatggcgggATTCCCTTCATTTCCATAACAGGCGCCATTGCCTcacctatacaatcctcaaaataGTCAGTGTGTGACTATCAGACaagctccatagtgataaatagtgTACGTGTGATTTGAAGCAGAACGAAAATGGACACCCTgagttttgggtgtgtgtttgaacagatATATATGTTGTTACAATAATAATTTCAAGATCTAAAGATGTAGATCCTGGTGGGTTTAAAAACAcaattgttgttttaaataagCATAAACAATTAAGAAAACAATCGAGTGCTTTCATTATGGATCTGTGCATTTtcaaagtgacacctctgttatttaatgcgATCAAACGAAAAATCTAAATGCGTGATTTATTCACTGCTTTTTATTCAGAATGTTTgaattatacagtgaagaaaaggttacaagatttgataacttgatccAATTtcttataatagctattaattttaataggctaaacagTTCAATTTATATGCAGCTTTTTAATATATGTTGTTTATGctgtttatgtaaataataacaataattatacatattttgtcatttgtggaatttctttaaaactattttttgggGGACTTTGGGGCTATTTTCACTTCACAATGTTAACAGTTTTTTGCCTttaaaaaacataacaatttCAACATACTCTTTCACAAACTGACTAAGACATGTCAGATATACAAtgaatcaaatataaaaacataaagtaTAAAAGAACAACATACCGTGCAGACATCAAACAGAAACTCTGTAAGGGGTTAAATAAAACCATATTGTTTTACTTCAATTGTTCAGCCTTCTCATCCTTCATTATTTTTAAAGCCTCCACATAGGTGGCAAACTTCTTTTTAAAGACAATCAAATGAGGAGCTGTGTTTCAAAATGTTGCATTTATGAATGAAGTATTGaactaaaataagtaaacaagCTGCAGTTAATCCCTAGTGTTAACAGGTATGTATTTTATGCTCAGAAGCGTATATGTGCGCGAGCACACAGTAACATCGCCACCTGCTGGCTCGGCATAAAGAATACAGCTAATAAATTCTCTTGAGTGTACTTTTAAATCGGAATTTTGACAACAACTTTCAGGAAGTCATTTTTTAGTTCAAAGCTCTGTCAATGTACCCGTAGATATGAATAAATTAAGCTTGCAAGTACCCCAGAAGTACAAATATCTGACTTGCATGTCCTGGGGAAGttgatttagaaaaaaacagcaattgtGTAGGCTACTTTCGATGTTTTGTGTGAAAAATAAATCGCCTCTAGTGTCTTGCCTTAAAAACTCTGGGTATTTCATTTCTCAGtgctgcaaaaaacaaaaacattctgtGTATATGACTTCTGTAATAAAGCTTAATTACTTCGCCTCACAGTTCTAAGGAGAATGAGGTGTGTATTCGTGTACACATGAAAGATGCAATCAAAAGCCTCGGATGAATACCTCCTCCTAAACTCTAAAACTTGTACATTATCTTCTTTTACTAAGATGTCTATCCACCTGTTTCACCTTCCTCCAGTATAAATCTCTCTCTGAAGCTTCATGTACGTTTACTTCACTCCTCCAGCAACCTCAAAGACTATATTCAAGCATAAATGGCTTTTTTTCACATCCCTGCCCACCAGAGACAAAAATGCACGTGGATCTACCTCCCGAAAGCCTCAGCCATTGCTCCTCTGTAACCTCATACAGGTCAAGTGctgcattttcatttttctgaCAGGAACCTAATGCAAATGCAGGCCAATTTTGAATATGATGTTTGATTCATACCTTGGGAGAGGTCTCGAGAAGATCCGTCAACATGGCTCGGAGCAGTGTCTCTGGTGTGTGTGTGGCTACAGGGATCATGCAGATTTTCTTTTCCTGATAtatgaatatacatatataaatacagatCTATATATACACTGTACATTATACATAGAAACACTAATGAAGTTTGATTGTTAGTTGTGCACTCACAGCATGAGATGTAATTCCCCAGAAATCCGCTCTTTTTGGAAGCAAATGCAGTAGCGTCTACTGATGTCAAAACTCCCGTTATCCTTCACCCAATGCCAGTGTTTTCCTCTGTGTTCCAAGTGCCAATAACTTTGTGAATTCCTTTACTGTGACCCAATGAGAAAGAAAATTGCacattaactactgtaaaaaagtaaatgaataaataaacgtgGAGAGAAGAAAATACATCTTAATAAAAAGATTTGTAACAAAGAATTGCTGTGGTTTGTTTTATTGCGTGGTGGTTGAGCTTATTAAAGACACTTAATTTCagtgtt

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0000027 ribosomal large subunit assembly biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0043009 chordate embryonic development biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0048856 anatomical structure development biological_process
GO:0010467 gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0061028 establishment of endothelial barrier biological_process
GO:0006518 peptide metabolic process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0043226 organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019843 rRNA binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008813 True 4116 lncRNA 0.35 2 31204925 31211308

Neighbor

gene id symbol gene type direction distance location
XLOC_004211 NA coding downstream 2086 31200219 ~ 31202839 (-)
XLOC_004210 si:dkey-238i5.3 coding downstream 32649 31168697 ~ 31172276 (-)
XLOC_004209 si:cabz01069582.1 coding downstream 58117 31144720 ~ 31146808 (-)
XLOC_004208 ier2b coding downstream 165392 31038409 ~ 31039533 (-)
XLOC_004207 zgc:153665 coding downstream 568762 30626768 ~ 30636163 (-)
XLOC_004213 nacc1b coding upstream 7648 31218956 ~ 31234584 (-)
XLOC_004214 man2b1 coding upstream 46808 31258116 ~ 31276080 (-)
XLOC_004215 AL844172.2 coding upstream 657712 31869020 ~ 31872628 (-)
XLOC_004216 NA coding upstream 938910 32150218 ~ 32157526 (-)
XLOC_004217 NA coding upstream 1154604 32365912 ~ 32391388 (-)
XLOC_004063 CR854846.1 misc downstream 15077247 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 18513234 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 18583158 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 18613629 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 18691663 12512966 ~ 12513262 (-)
XLOC_004200 CR318645.1 non-coding downstream 1103668 30101142 ~ 30101257 (-)
XLOC_004198 CU652893.1 non-coding downstream 1243024 29961114 ~ 29961901 (-)
XLOC_004193 NA non-coding downstream 1467678 29734578 ~ 29737247 (-)
XLOC_004190 NA non-coding downstream 1659936 29537982 ~ 29544989 (-)
XLOC_004218 NA non-coding upstream 1246008 32457316 ~ 32563722 (-)
XLOC_004219 NA non-coding upstream 1261475 32472783 ~ 32473383 (-)
XLOC_004221 BX000696.1 non-coding upstream 1519857 32731165 ~ 32737593 (-)

Expression


Co-expression Network