LOC110519477 (LOC105007586)


Basic Information

Item Value
gene id LOC110519477
gene name LOC105007586
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493659.1
NCBI id JAAXML020000263.1
chromosome length 2745910
location 377666 ~ 410533 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036971955.1
GGTGACGGAGCCACGTAAGTGACGCGCCTGTCTGTCAGCCGAGCCGTAGAACAAGATGGCGGACTCCTTAGCAGCGGCTCAGGGAGAGGAGAACGAACCGGAGAAAGAAGGCAAGGAGAgacggatggagggaggtagtgaGAGCCGGGGGTCGAAGGAGACCTCCGAGGTGACGGAGACGCTGGGGTTTTACGACAAGAAGAAAGTCCAGAAGGACAAGAAACGGAGTCTGTCTGatctgtCCCTAGCGAGGTTCATGGGGGCGGAGCTGACCCGAGGATACTTCCTGGAACACAATGAGGCTAAATacacagagagacgagagagggtCTATACCTGCCTCCGGATCCCCAAGGAACTAgagaagttgATGCTGTTTGGGTTCTTCCTGTGTCTGGATGCCTTCCTGTACGTGTTCACCCTGCTGCCTCTCAGAGTTCTATTGGCCCTCGTCCACCTACTGACCCTACCCTGctgtggtctgagtgggtctcctctcctccagccagCCCAGGTCTGTGATGTGTTGAAGGGTGTCATCATGGTGTTGTGTTACATCATGATGAGCTACGTGGATTACAGCATGATGTATCACCTGATCAGAGGACAGTCTGTCATCAAACTCTATATTATCTACAACATGCTGGAGGTTGCAGACAGGTTGTTCTCTTCGTTTGGTCAGGACATTCTGGACGCTCTCTACTGGACCGCAACAGAAcctaaagagaagaagagagctcATATAGGAGTTGTTCCTCACTTCCTCATGGCTGTTCTATATGTCTGTATCCTTACTGAacctaaagaggagaagagagctcaTATAGGAGTTGTTCCTCACTTCCTCATGGCTGTTCTATATGTCTTTCTTCATGCTATCCTCATCATGGTTCAGGCCACTACTCTGAACGTTGCCTTCAACTCTCACAACAAGTCTCTACTCACCATCATGATGTCTAACAATTTCGTGGAGATCAAAGGAAGTGTGTTTAAGAAGTTTGAGAAGAACAACCTCTTTCAGATGTCTAACAGTGacataAAGGAGAGGTTCACTAACTATGTTCTGTTACTCATTGTCTGTCTACGGAACATGGAGCAGTTCTCATGGAACCCTGACCACCTGTGGGTGCTGTTTCCTGACGTCGTCATGGTGATAGCGTCTGAGGTTACCGTGGATGTTGTCAAGCACGCCTTCATCACCAAGTTTAACGACATCACTGCAGACGTCTACGGGGAGTACCGCGCCAGCCTGGCGTTCGACCTCGTCAGCAGCAGACAGAAAAATGCCTATACAGACTACAGTGACTCAGTCTCCAGGAGAATGGGCTTCATTCCACTGCCTTTAGCTCTGCTGgatgatCTCTCTGAAGGTACTGAACAGTATCGTGTTGCTGGGAACGTCCTGTGTGTTCGTCAAAGAAGCCAATATGGAGGAGAAGCTGTTCCAGTCTCCCCCCTCTGCTGCCTCCAGCCGCTCCAACTCTAGagcacacagacccacacacaccacccccccagGTGAGCCAATCGTAGAAGAGGGGGTCGTGTCTTCAGCGTCAGTCACTTGTCAGCCAACCAACCACCAGCAAGAGAGTCCCGCCTCCACTCTGCCAACCAGCCAATCAGACGATCACTTCCTGACCACGCCCGACGGCGAGGACGGCGACAAGGACATCTCCGCGGCaacgggagaggaaggagaggggctTCAACATAGAAACCCCGCCCCCAAGAAAGACCTATTGGAGATCGACCGCTTCACTATCTGTGGAAACCGCAtcgactgacacacacacacacacacacacacacacacacacacaattgactGGCTGATACCATGGCAACAAGAGACTGGCCAGGGGTTAAGAGGTCGTG
>XM_036971953.1
TGACGGAGCCACGTAAGTGACGCGCCTGTCTGTCAGCCGAGCCGTAGAACAAGATGGCGGACTCCTTAGCAGCGGCTCAGGGAGAGGAGAACGAACCGGAGAAAGAAGGCAAGGAGAgacggatggagggaggtagtgaGAGCCGGGGGTCGAAGGAGACCTCCGAGGTGACGGAGACGCTGGGGTTTTACGACAAGAAGAAAGTCCAGAAGGACAAGAAACGGAGTCTGTCTGatctgtCCCTAGCGAGGTTCATGGGGGCGGAGCTGACCCGAGGATACTTCCTGGAACACAATGAGGCTAAATacacagagagacgagagagggtCTATACCTGCCTCCGGATCCCCAAGGAACTAgagaagttgATGCTGTTTGGGTTCTTCCTGTGTCTGGATGCCTTCCTGTACGTGTTCACCCTGCTGCCTCTCAGAGTTCTATTGGCCCTCGTCCACCTACTGACCCTACCCTGctgtggtctgagtgggtctcctctcctccagccagCCCAGGTCTGTGATGTGTTGAAGGGTGTCATCATGGTGTTGTGTTACATCATGATGAGCTACGTGGATTACAGCATGATGTATCACCTGATCAGAGGACAGTCTGTCATCAAACTCTATATTATCTACAACATGCTGGAGGTTGCAGACAGGTTGTTCTCTTCGTTTGGTCAGGACATTCTGGACGCTCTCTACTGGACCGCAACAGAAcctaaagagaagaagagagctcATATAGGAGTTGTTCCTCACTTCCTCATGGCTGTTCTATATGTCTGTATCCTTACTGAacctaaagaggagaagagagctcaTATAGGAGTTGTTCCTCACTTCCTCATGGCTGTTCTATATGTCTTTCTTCATGCTATCCTCATCATGGTTCAGGCCACTACTCTGAACGTTGCCTTCAACTCTCACAACAAGTCTCTACTCACCATCATGATGTCTAACAATTTCGTGGAGATCAAAGGAAGTGTGTTTAAGAAGTTTGAGAAGAACAACCTCTTTCAGATGTCTAACAGTGacataAAGGAGAGGTTCACTAACTATGTTCTGTTACTCATTGTCTGTCTACGGAACATGGAGCAGTTCTCATGGAACCCTGACCACCTGTGGGTGCTGTTTCCTGACGTCGTCATGGTGATAGCGTCTGAGGTTACCGTGGATGTTGTCAAGCACGCCTTCATCACCAAGTTTAACGACATCACTGCAGACGTCTACGGGGAGTACCGCGCCAGCCTGGCGTTCGACCTCGTCAGCAGCAGACAGAAAAATGCCTATACAGACTACAGTGACTCAGTCTCCAGGAGAATGGGCTTCATTCCACTGCCTTTAGCTCTGCTGtTGATCAGGGTGGTGACCAGCTCAGTGAAGATCCAGGGATCTCTCTCCTTCATGTGTGTTCTTCTCTTCTATCTGGGgatgatCTCTCTGAAGGTACTGAACAGTATCGTGTTGCTGGGAACGTCCTGTGTGTTCGTCAAAGAAGCCAATATGGAGGAGAAGCTGTTCCAGTCTCCCCCCTCTGCTGCCTCCAGCCGCTCCAACTCTAGagcacacagacccacacacaccacccccccagGTGAGCCAATCGTAGAAGAGGGGGTCGTGTCTTCAGCGTCAGTCACTTGTCAGCCAACCAACCACCAGCAAGAGAGTCCCGCCTCCACTCTGCCAACCAGCCAATCAGACGATCACTTCCTGACCACGCCCGACGGCGAGGACGGCGACAAGGACATCTCCGCGGCaacgggagaggaaggagaggggctTCAACATAGAAACCCCGCCCCCAAGAAAGACCTATTGGAGATCGACCGCTTCACTATCTGTGGAAACCGCAtcgactgacacacacacacacacacacacacacacacacacacaattgactGGCTGATACCATGGCAACAAGAGACTGGCCAGGGGTTAAGAGGTCGTGCACTCAGATGGACTCGCAAGACTGAACTCTGGGTATTTTATTTATTAACAACGCGGCTGTTATGTCAGCTGTCGTAGTGAGGTCGTAACACTACGTGAAGCTCCTTAAGGATCCTTACAGCTGGACTATGAAGCGTTCAGAAGAcactctgatgatgatgatggtgtttaaCACAAACTGACCGGTTGGTTTTTCCTCTAAAGATGTTTTgtcaatttgtaaaaaaaaaaaaaattaaagacaAAAATGTCATTTTAACATTTAACCATTAATCTGCTCCAGGAGAGTGATGacaacaaaccccccccccccccccccccacacacacagactctctcacCATCTGGTTGGTTCCCCCCACAGACTCTCTCACCATCTGGTTGGTTCCCCCCACAGACTCTCTCACCATCTGGTTGGTTCCCCCCACAGACTCTCTCACCATCTGGTTGGTTCCCCCCACAGACTCTCTCACCATCTGGTTGGTTCCCCCCACAGACTCTCTCACCATCTGGTTGGTTCCCCCCACAGACTCTCTCACCATCTGGTTGGTTCCCCCCCACAGACTCTCTCACCATCTGGTTGGTTCCCCCCACAGACTCTCTCACCATCTGGTTGGTTCCCCCCCACAGACTCTCTCACCATCTGGTTGGTTCCCCCCACAGACTCTCTCACCATCTGGTTGGTTCCCCCCACAGACTCTCTCACCATCTGGTTGGTTCCCCCCACAGACTCTCTCACCATCTGGTTGGTTCCCCCCACAGACTCTCTCACCATCCTGTGTAACTGAACTGTGTTGAATGCCCCTTTAAGACTCACACTACGTGACATCACACTTCCTGGAGGaagttcacaccccttgactctattccacatgttgttgttgttaccgTCTGAATTTATAATGACTATATGTTGGGTCCCTGGCtgacacacaacaccccataatgtcaaagtggaattatgtttgtcTACATTTTTAACAAGTTCATTAAAaaaggaaaagctgaaa
>XM_036971954.1
GACGGAGCCACGTAAGTGACGCGCCTGTCTGTCAGCCGAGCCGTAGAACAAGATGGCGGACTCCTTAGCAGCGGCTCAGGGAGAGGAGAACGAACCGGAGAAAGAAGGCAAGGAGAgacggatggagggaggtagtgaGAGCCGGGGGTCGAAGGAGACCTCCGAGGTGACGGAGACGCTGGGGTTTTACGACAAGAAGAAAGTCCAGAAGGACAAGAAACGGAGTCTGTCTGatctgtCCCTAGCGAGGTTCATGGGGGCGGAGCTGACCCGAGGATACTTCCTGGAACACAATGAGGCTAAATacacagagagacgagagagggtCTATACCTGCCTCCGGATCCCCAAGGAACTAgagaagttgATGCTGTTTGGGTTCTTCCTGTGTCTGGATGCCTTCCTGTACGTGTTCACCCTGCTGCCTCTCAGAGTTCTATTGGCCCTCGTCCACCTACTGACCCTACCCTGctgtggtctgagtgggtctcctctcctccagccagCCCAGGTCTGTGATGTGTTGAAGGGTGTCATCATGGTGTTGTGTTACATCATGATGAGCTACGTGGATTACAGCATGATGTATCACCTGATCAGAGGACAGTCTGTCATCAAACTCTATATTATCTACAACATGCTGGAGGTTGCAGACAGGTTGTTCTCTTCGTTTGGTCAGGACATTCTGGACGCTCTCTACTGGACCGCAACAGAAcctaaagagaagaagagagctcATATAGGAGTTGTTCCTCACTTCCTCATGGCTGTTCTATATGTCTTTCTTCATGCTATCCTCATCATGGTTCAGGCCACTACTCTGAACGTTGCCTTCAACTCTCACAACAAGTCTCTACTCACCATCATGATGTCTAACAATTTCGTGGAGATCAAAGGAAGTGTGTTTAAGAAGTTTGAGAAGAACAACCTCTTTCAGATGTCTAACAGTGacataAAGGAGAGGTTCACTAACTATGTTCTGTTACTCATTGTCTGTCTACGGAACATGGAGCAGTTCTCATGGAACCCTGACCACCTGTGGGTGCTGTTTCCTGACGTCGTCATGGTGATAGCGTCTGAGGTTACCGTGGATGTTGTCAAGCACGCCTTCATCACCAAGTTTAACGACATCACTGCAGACGTCTACGGGGAGTACCGCGCCAGCCTGGCGTTCGACCTCGTCAGCAGCAGACAGAAAAATGCCTATACAGACTACAGTGACTCAGTCTCCAGGAGAATGGGCTTCATTCCACTGCCTTTAGCTCTGCTGtTGATCAGGGTGGTGACCAGCTCAGTGAAGATCCAGGGATCTCTCTCCTTCATGTGTGTTCTTCTCTTCTATCTGGGgatgatCTCTCTGAAGGTACTGAACAGTATCGTGTTGCTGGGAACGTCCTGTGTGTTCGTCAAAGAAGCCAATATGGAGGAGAAGCTGTTCCAGTCTCCCCCCTCTGCTGCCTCCAGCCGCTCCAACTCTAGagcacacagacccacacacaccacccccccagGTGAGCCAATCGTAGAAGAGGGGGTCGTGTCTTCAGCGTCAGTCACTTGTCAGCCAACCAACCACCAGCAAGAGAGTCCCGCCTCCACTCTGCCAACCAGCCAATCAGACGATCACTTCCTGACCACGCCCGACGGCGAGGACGGCGACAAGGACATCTCCGCGGCaacgggagaggaaggagaggggctTCAACATAGAAACCCCGCCCCCAAGAAAGACCTATTGGAGATCGACCGCTTCACTATCTGTGGAAACCGCAtcgactgacacacacacacacacacacacacacacacacacacaattgactGGCTGATACCATGGCAACAAGAGACTGGCCAGGGGTTAAGAGGTCGTGCACTCAGATGGACTCGCAAGACTGAACTCTGGGTATTTTATTTATTAACAACGCGGCTGTTATGTCAGCTGTCGTAGTGAGGTCGTAACACTACGTGAAGCTCCTTAAGGATCCTTACAGCTGGACTATGAAGCGTTCAGAAGAcactctgatgatgatgatggtgtttaaCACAAACTGACCGGTTGGTTTTTCCTCTAAAGATGTTTTgtcaatttgtaaaaaaaaaaaaaattaaagacaAAAATGTCATTTTAACATTTAACCATTAATCTGCTCCAGGAGAGTGATGacaacaaaccccccccccccccccccccacacacacagactctctcacCATCTGGTTGGTTCCCCCCACAGACTCTCTCACCATCTGGTTGGTTCCCCCCACAGACTCTCTCACCATCTGGTTGGTTCCCCCCACAGACTCTCTCACCATCTGGTTGGTTCCCCCCACAGACTCTCTCACCATCTGGTTGGTTCCCCCCACAGACTCTCTCACCATCTGGTTGGTTCCCCCCACAGACTCTCTCACCATCTGGTTGGTTCCCCCCCACAGACTCTCTCACCATCTGGTTGGTTCCCCCCACAGACTCTCTCACCATCTGGTTGGTTCCCCCCCACAGACTCTCTCACCATCTGGTTGGTTCCCCCCACAGACTCTCTCACCATCTGGTTGGTTCCCCCCACAGACTCTCTCACCATCTGGTTGGTTCCCCCCACAGACTCTCTCACCATCTGGTTGGTTCCCCCCACAGACTCTCTCACCATCCTGTGTAACTGAACTGTGTTGAATGCCCCTTTAAGACTCACACTACGTGACATCACACTTCCTGGAGGaagttcacaccccttgactctattccacatgttgttgttgttaccgTCTGAATTTATAATGACTATATGTTGGGTCCCTGGCtgacacacaacaccccataatgtcaaagtggaattatgtttgtcTACATTTTTAACAAGTTCATTAAAaaaggaaaagctgaaa
>TU2667454
AGACTCTCTCACCATCTGGTTGGTTCCCCCCACAGACTCTCTCACCATCTGGTTGGTTCCCCCCACAGACTCTCTCACCATCTGGTTGGTTCCCCCCACAGACTCTCTCACCATCTGGTTGGTTCCCCCCACAGACTCTCTCACCATCCTGTGTAACTGAACTGTGTTGAATGCCCCTTTAAGACTCACACTACGTGACATCACACTTCCTGGAGGaagttcacaccccttgactctattccacatgttgttgttgttaccgTCTGAATTTATAATGACTATATGTTGGGTCCCTGGCtgacacacaacaccccataatgtcaaagtggaattatgtttgtcTACATTTTTAACAAGTTCATTAAAaaaggaaaagctga
>TU2667453
CACAGACTCTCTCACCATCTGGTTGGTTCCCCCCACAGACTCTCTCACCATCCTGTGTAACTGAACTGTGTTGAATGCCCCTTTAAGACTCACACTACGTGACATCACACTTCCTGGAGGaagttcacaccccttgactctattccacatgttgttgttgttaccgTCTGAATTTATAATGACTATATGTTGGGTCCCTGGCtgacacacaacaccccataatgtcaaagtggaattatgtttgtcTACATTTTTAACAAGTTCATTAAAaaaggaaaagctga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036971955.1 False 1878 mRNA 0.52 13 377666 409524
XM_036971953.1 False 2962 mRNA 0.50 14 377668 410533
XM_036971954.1 False 2880 mRNA 0.51 14 377669 410533
TU2667454 False 380 lncRNA 0.46 1 410152 410531
TU2667453 True 284 lncRNA 0.43 1 410248 410531

Neighbor

gene id symbol gene type direction distance location
LOC118946999 med28 coding upstream 61879 315236 ~ 320283 (+)
LOC118947009 NA coding upstream 329875 45040 ~ 47791 (+)
LOC110516484 spock3 coding upstream 332718 21703 ~ 44948 (+)
LOC110515074 NA coding downstream 4976 415509 ~ 469541 (+)
LOC118947011 uchl1 coding downstream 131957 542490 ~ 553415 (+)
LOC110517278 LOC106596232 coding downstream 144975 555508 ~ 648529 (+)
LOC110510700 NA coding downstream 157017 563509 ~ 569406 (+)
LOC118947015 tmem192 coding downstream 239177 649710 ~ 692129 (+)
G2332120 NA non-coding upstream 2450 371440 ~ 375216 (+)
G2332118 NA non-coding upstream 12106 364627 ~ 365560 (+)
G2332110 NA non-coding upstream 25107 350100 ~ 352559 (+)
G2332112 NA non-coding upstream 29194 347514 ~ 348472 (+)
G2332104 NA non-coding upstream 48307 328512 ~ 329359 (+)
G2332136 NA non-coding downstream 4110 414643 ~ 414860 (+)
G2332137 NA non-coding downstream 7691 418224 ~ 421579 (+)
G2332138 NA non-coding downstream 9310 419843 ~ 421060 (+)
G2332139 NA non-coding downstream 11171 421704 ~ 422725 (+)
G2332149 NA non-coding downstream 32510 443043 ~ 443396 (+)
G2332067 NA other upstream 146818 228794 ~ 230848 (+)
G2332063 NA other upstream 151418 211123 ~ 226248 (+)
G2332039 NA other upstream 233368 142694 ~ 144298 (+)
G2332406 NA other downstream 782488 1193021 ~ 1193350 (+)
G2332408 NA other downstream 786883 1197416 ~ 1198795 (+)
G2332472 NA other downstream 968339 1378872 ~ 1379331 (+)
G2332498 NA other downstream 1014023 1424556 ~ 1426452 (+)
G2332127 NA non-coding upstream 11520 398188 ~ 398632 (+)
G2332126 NA non-coding upstream 12201 397363 ~ 397951 (+)
G2332125 NA non-coding upstream 12966 396757 ~ 397186 (+)

Expression


Co-expression Network