Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC118947011 |
| gene name | uchl1 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NW_023493659.1 |
| NCBI id | JAAXML020000263.1 |
| chromosome length | 2745910 |
| location | 542490 ~ 553415 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| uchl1 | Predicted to enable thiol-dependent deubiquitinase. Predicted to be involved in protein deubiquitination. Predicted to act upstream of or within ubiquitin-dependent protein catabolic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be active in cytoplasm. Is expressed in nervous system; neural tube; and trigeminal placode. Human ortholog(s) of this gene implicated in Alzheimer's disease; Parkinson's disease; and hereditary spastic paraplegia. Orthologous to human UCHL1 (ubiquitin C-terminal hydrolase L1). |
| description |
|---|
| ubiquitin carboxyl-terminal hydrolase isozyme L1-like |
| id | name | namespace |
|---|---|---|
| GO:0006511 | ubiquitin-dependent protein catabolic process | biological_process |
| GO:0005622 | intracellular anatomical structure | cellular_component |
| GO:0004221 | obsolete ubiquitin thiolesterase activity | molecular_function |
| id | description |
|---|---|
| K05611 | UCHL1; ubiquitin carboxyl-terminal hydrolase L1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036972011.1 | True | 1262 | mRNA | 0.52 | 9 | 542490 | 553415 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110515074 | NA | coding | upstream | 72949 | 415509 ~ 469541 (+) |
| LOC110519477 | LOC105007586 | coding | upstream | 131957 | 377666 ~ 410533 (+) |
| LOC118946999 | med28 | coding | upstream | 226703 | 315236 ~ 320283 (+) |
| LOC118947009 | NA | coding | upstream | 494699 | 45040 ~ 47791 (+) |
| LOC110516484 | spock3 | coding | upstream | 497542 | 21703 ~ 44948 (+) |
| LOC110517278 | LOC106596232 | coding | downstream | 2093 | 555508 ~ 648529 (+) |
| LOC110510700 | NA | coding | downstream | 14135 | 563509 ~ 569406 (+) |
| LOC118947015 | tmem192 | coding | downstream | 96295 | 649710 ~ 692129 (+) |
| LOC118947016 | LOC106591887 | coding | downstream | 176589 | 730004 ~ 745550 (+) |
| LOC118947001 | naf1 | coding | downstream | 204236 | 757651 ~ 775355 (+) |
| G2332171 | NA | non-coding | upstream | 40310 | 474417 ~ 502180 (+) |
| G2332080 | NA | non-coding | upstream | 43976 | 466423 ~ 498514 (+) |
| G2332216 | NA | non-coding | upstream | 44601 | 497178 ~ 497889 (+) |
| G2332214 | NA | non-coding | upstream | 62439 | 479315 ~ 480051 (+) |
| G2332157 | NA | non-coding | upstream | 83146 | 458033 ~ 459344 (+) |
| G2332232 | NA | non-coding | downstream | 1408 | 554823 ~ 555095 (+) |
| G2332242 | NA | non-coding | downstream | 44791 | 598206 ~ 598457 (+) |
| G2332243 | NA | non-coding | downstream | 56157 | 609572 ~ 610090 (+) |
| G2332067 | NA | other | upstream | 311642 | 228794 ~ 230848 (+) |
| G2332063 | NA | other | upstream | 316242 | 211123 ~ 226248 (+) |
| G2332039 | NA | other | upstream | 398192 | 142694 ~ 144298 (+) |
| G2332406 | NA | other | downstream | 639606 | 1193021 ~ 1193350 (+) |
| G2332408 | NA | other | downstream | 644001 | 1197416 ~ 1198795 (+) |
| G2332472 | NA | other | downstream | 825457 | 1378872 ~ 1379331 (+) |
| G2332498 | NA | other | downstream | 871141 | 1424556 ~ 1426452 (+) |
