LOC118947016 (LOC106591887)


Basic Information

Item Value
gene id LOC118947016
gene name LOC106591887
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493659.1
NCBI id JAAXML020000263.1
chromosome length 2745910
location 730004 ~ 745550 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036972030.1
tctctccgtctctctggggGTGGAGGGGTGTTGTTGACTTCTGAGTTGGCATGACGATCTGACACCCTGCCGTCCAGAGCCTTCTGTCCATTTCCACGGTGACCTGATCCCATTCCGCTATTCTGTTCTCCGAGTTCCGGACCTGTGGAACACAGAGTGGATTACCGCTGTACACACACACGGAGTGagttcagagagaggagagatctgGGAACGCAGTGAGGATGCCGGTGCAGCAGATCTCCGTGGTCCCCGCTCGGGAGATGGCCAATAACGGCCGGAGCACCCCTCGCTCCAAAGACAAGACCGAGagtaCTAAAGGTCCAGGTCGGTCAGGTAATCGATCCAGCAACGTCTTGAAGGCCAGCAGTTCTACAACAGGATTGGCTCCTGGCAGTGTTTCCAGGACAACTCCCTCCTCTCAGGACATCTGCAGgccgGTGCCGCTGGGTCGTGTAGAGGAAGGTTGTGACACAGCAGTGATGAAGCTGAGCGGCGCAGCATTAGGCTCCTCCCAGACCGCGTTAGGCTCCTCCCAGCAGGGCCAAaccaggaagaagaagaagaaaccaaaCAGGAAGAGAGACTCCTGCTCCGCCCCCGATGCCCCAGCGACCGCACAAGATGACCCGGTCCAACACAGTGACGACCGCAGTGACCGCAGCTCTGACCGCAtcggagagaggggggagaggaggagggagaggagaggggagaggaggagggagaggagaggggaacatcCCCGCCACCGTAGCGCTGCCCCTCCTGAATCTGATTCGTCATCTGACGGGGAGGCGGGGCGGGAGGCCAGAAGCTGGAGCAGGGAGAAAGCCAAGAGGGGACGACGCCGCAGTGggagtagcagggagaggggagggggagaggggatggagcTGCAGTCTGTAGGGTCTGATGAGGGGAAGGAGAACCAAGAGAAAGAGGTACCACTGGAGAACGGTTCCGGAGTGAAGAACCGTcgaccaggaggaggaggggaggagagcgggCGGAGCTCCCAGCGCAGGGAGGGGGCGGGGTCTAAGTTCCGTAGCCCCGGCGGTAGCTCATCATTGGctgaggatggagagggggagggacagaTCACTAAGAATTACCAGGAGACCGGGTCAGTGGGTGGAGACATGTCCGCGCCGTCGCCACGGAGATATGGGGGCTGCAACGCCCCCGAAGGCTGCTCCGATGACGAGCCAGAGGTCTGCAGgatctGCCACTGTGAAGGAGATGAGGAGTGTGTGTTGATAACCCCGTGCCGCTGTACAGGCAGCATGAGGTTTGTTCACCAGGACTGTCTCAACCAGTGGATCAAGTCATCAGACACACACTGCTGTGAGCTGTGCCAATACAACTTCATCATGGAGACTCACCTTAAACCTCTACGTAAGTGGGAGAAGCTCCAGATGTCGACCAATGAGAGGAGGAAGATCTTATGCTCCCTGATGTTCCACCTGGTGGCCATTGGTTGTGTTCTCTGGTCCGTATACGTCCTCGTCAACAGAACCCTCCACGAGATCAACCTGGGACGCAACACCGacGACATGTGGAGAATATCAGTGATGAAGTACTACACTGCTGAGGgtgtgttGGAGTGGCCGTTCTGGATGAAGCTGGTCATCGTGGCGATAGGCATGTCAGGCGGACTGGTGTTCATGTATGTCCAGTGTAAAGTGTACTGGTTGCTATGGAGACGACTCAAAGCCTTCAATCGCATCATCACTGTGCAGAACTGCCCCGAGAAGCCGCCGCCCACCAACGCCGCGCTGGCCAATGGGAATCACCCTGAGGCCGTGGAAGTCCCGATAGGCCCCGCCCCCGAGGTTATCCAGATGGACTCCGACCTCTCGGAGGAAAACCccgtctgacacacacacacagacacacaacacacacacacagctcttggTAATGCACCCTCCCTATAGCCTATCAGAGCCCAGCACACCAAAGAGTCATAATGTGACGTAGCCAATAAAAGCATCTGTTATAGAAGCAGCTGTAGATTAGCCAATCAGTGTCTGTTATAGAAGCAGCTGTAGATTAGCCAATCAGAGCGTCTGTTATAGAAGCAGCTGTAGATTAGCCAATCAGAGCGTCTGTTATACTCTCTCAGTATTCAATATAAACAGCCTGAGGAGTAGCTGATGCGTAGAACCAAGTGTTCAAGGGCTGGAACAAAACCCTGCACACCTTGCAGCTCTcatggaggagggttagagtcaTAGAGCATATTTATTTATGTTAGTATTTAGTCTCTCTCTGCTGGACAGGATAGAACTCtgaacctaacccttacccatattTATTTATGTTAGTATTTAGTCTCTCTCTGCTGGACAGGATAGAActctgaacctaaccctaacccatatttatttatgtTAGTATTTAGTCTCTCTCTGCTGGACAGGATAGAActctgaacctaaccctaacccatatttatttatgtTAGTATTTAGTCTCTCTCTGCTGGACAGGATAGAActctgaacctaaccctaacccatatttatttatgtTAGTATTTAGTCTCTCTCTGCTGGACAGGATAGAACTCtgaacctaacccttacccatattTATTTATGTTAGTATTTAGTCTCTCTCTGCTGGACAGGATAGAActctgaacctaaccctaactcatattTATTTATGTTAGTATTTAGTCTCTCTCTGCTGGACAGGATAGAACTCTGAATAGAAATACTTGTGAAATGTGGTATTAAAGGTCCCGGTCTGTCACTATGACGTCTAGAAGTCTATCtgaagagctgtctgtctgtcactatgaTGTCTATCtgaagagctgtctgtctgtcactatgaTGTCTATCtgaagagctgtctgtctgtcactatgaTGTCTATCtga

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase MARCH1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036972030.1 True 2896 mRNA 0.52 8 730004 745550

Neighbor

gene id symbol gene type direction distance location
LOC118947015 tmem192 coding upstream 37875 649710 ~ 692129 (+)
LOC110517278 LOC106596232 coding upstream 82283 555508 ~ 648529 (+)
LOC110510700 NA coding upstream 160598 563509 ~ 569406 (+)
LOC118947011 uchl1 coding upstream 176589 542490 ~ 553415 (+)
LOC110515074 NA coding upstream 260463 415509 ~ 469541 (+)
LOC118947001 naf1 coding downstream 12101 757651 ~ 775355 (+)
LOC110514760 pmm2 coding downstream 30056 775606 ~ 782226 (+)
LOC118947012 LOC105009536 coding downstream 308531 1054081 ~ 1100594 (+)
LOC110515175 LOC105007598 coding downstream 376268 1121818 ~ 1185821 (+)
LOC118947006 tmem144 coding downstream 454464 1200014 ~ 1220632 (+)
G2332265 NA non-coding upstream 3612 724995 ~ 726392 (+)
G2332263 NA non-coding upstream 7578 721563 ~ 722426 (+)
G2332253 NA non-coding upstream 33343 696267 ~ 696661 (+)
G2332251 NA non-coding upstream 38531 689450 ~ 691473 (+)
G2332181 NA non-coding downstream 40148 785698 ~ 787279 (+)
G2332276 NA non-coding downstream 44587 790137 ~ 791443 (+)
G2332278 NA non-coding downstream 47941 793491 ~ 795321 (+)
G2332193 NA non-coding downstream 69985 815535 ~ 817883 (+)
LOC118946999 med28 other upstream 413667 315236 ~ 320283 (+)
G2332067 NA other upstream 499156 228794 ~ 230848 (+)
G2332063 NA other upstream 503756 211123 ~ 226248 (+)
G2332039 NA other upstream 585706 142694 ~ 144298 (+)
G2332406 NA other downstream 447471 1193021 ~ 1193350 (+)
G2332408 NA other downstream 451866 1197416 ~ 1198795 (+)
G2332472 NA other downstream 633322 1378872 ~ 1379331 (+)
G2332498 NA other downstream 679006 1424556 ~ 1426452 (+)
LOC118947003 clrn2 other downstream 853742 1598798 ~ 1617849 (+)

Expression


Co-expression Network