LOC118947002 (LOC105007586)


Basic Information

Item Value
gene id LOC118947002
gene name LOC105007586
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493659.1
NCBI id JAAXML020000263.1
chromosome length 2745910
location 1562205 ~ 1586087 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036971986.1
ACGCGCCTGTCTGTCAGCCGAGCCGTAGAACAAGATGGCGGACTCCTTAGCAGCGGCTCAGGGAGAGGAGAACGAACCGGAGAAAGAAGGCAAGGAGAgacggatggagggaggtagtgaGAGCCGGGGCTCGAAGGAGACCTCCGAGGTGACGGAGACGCTGGGGTTTTACGACAAGAAGAAAGTCCAGAAGGACAAGAAACGGAGTCTGTCTGatctgtCCCTAGCGAGGTTCATGGGGGCGGAGCTGACCCGAGGATACTTCCTGGAACACAATGAGGCTAAATacacagagagacgagagagggtCTATACCTGCCTCCGGATCCCCAAGGAACTAgagaagttgATGCTGTTTGGGTTCTTCCTGTGTCTGGATGCCTTCCTGTACGTGTTCACCCTGCTGCCTCTCAGAGTTCTACTGGCCCTCGTCCACCTACTGACCCTACCCTGctgtggtctgagtgggtctcctctcctccagccagCCCAGGTCTGTGATGTGTTGAAGGGTGTCATCATGGTGTTGTGTTACATCATGATGAGCTACGTGGATTACAGCATGATGTATCACCTGATCAGAGGACAGTCTGTCATCAAACTCTATATTATCTACAACATGCTGGAGGTTGCAGACAGGTTGTTCTCTTCGTTTGGTCAGGACATTCTGGACGCTCTCTACTGGACCGCAACAGAAcctaaagagaagaagagagctcATATAGGAGTTGTTCCTCACTTCCTCATGGCTGTTCTATATGTCTTTCTTCATGCTATCCTCATCATGGTTCAGGCCACTACTCTGAACGTTGCCTTCAACTCTCACAACAAGTCTCTACTCACCATCATGATGTCTAACAATTTCGTGGAGATCAAAGGAAGTGTGTTTAAGAAGTTTGAGAAGAACAACCTCTTTCAGATGTCTAACAGTGacataAAGGAGAGGTTCACTAACTATGTTCTGTTACTCATTGTCTGTCTACGGAACATGGAGCAGTTCTCATGGAACCCTGACCACCTGTGGGTGCTGTTTCCTGACGTCGTCATGGTGATAGCGTCTGAGGTTACCGTGGATGTCGTCAAGCACGCCTTCATCACCAAGTTTAACGACATCACTGCAGACGTCTACGGGGAGTACCGCGCCAGCCTGGCGTTCGACCTCGTCAGCAGCAGACAGAAAAACGCCTATACAGACTACAGTGACTCAGTCTCCAGGAGAATGGGCTTCATTCCACTGCCTTTAGCTCTGCTGtTGATCAGGGTGGTGACCAGCTCAGTGAAGATCCAGGGATCTCTCTCCTTCATGTGTGTTCTTCTCTTCTATCTGGGgatgatCTCTCTGAAGGTACTGAACAGTATCGTGTTGCTGGGAACGTCCTGTGTGTTCGTCAAAGAAGCCAATATGGAGGAGAAGCTGTTCCAGTCTCCCCCCTCTGCTGCCTCCAGCCGCTCCAACTCTAGagcacacagacccacacacaccacccccccagGTGAGCCAATCGTAGAAGAGGGGGTCGTGTCTTCAGCGTCAGTCACTTGTCAGCCAACCAACCACCAGCAAGAGAGTCCCGCCTCCACTCTGCCAACCAGCCAATCAGACGATCACTTCCTGACCACGCCCGACGGCGAGGACGGCGACAAGGACATCTCCGCGGCaacgggagaggaaggagaggggctTAAACATAGAAACCCCGCCCCCAAGAAAGACCTATTGGAGATCGACCGCTTCACTATCTGTGGAAACCGCAtcgactgacacacacacacacacacacacacacacacacacacacacacacacacaattgactGGCTGATACCATGGCAACAAGAGACTGGCCAGGGGTTAAGAGGTCGTGCACTCAGATGGACTCGCAGGACTGAACTCTGGGTATTTTATTTATTAACAACGCGGCTGTTATGTCAGCTGTCGTAGTGAGGTCGTAACACTACGTGAAGCTCCTTAAGGATCCTTACAGCTGGACTATGAAGCGTTAAGAAGAcactctgatgatgatgatggtgtttaaCACAAACTGACCGGTTGGTTTTTCCTTTAAAGATGTTTTgtcaatttgtaaaaaaaattaaaataaagacAAAAATGTCATTTTAACAGTACATTTAACCATTAATCTGCTCCAGGAGAGTGATGACAAcgaaccccacacacacaaactctctcacCATCTGGTTGGTTCCCCCCACAGACTCTCTCACCATCCTGTGTAACTGAACTGTGTTGAATGCCCCTTTAAGACTCACACTACGTGACATCACACTTCCTGGAGGaagttcacaccccttgactctattccacatgttgttgttgttaccgTCTGAATTTATAATGACTATATGTTGGGTCCCTGGGtgacacacaacaccccataatgtcatagTGGAATTATGTTGGTCTACATTTTTAACAAGTTCATTAAAaaaggaaaagctgaaat
>XM_036971987.1
ACGCGCCTGTCTGTCAGCCGAGCCGTAGAACAAGATGGCGGACTCCTTAGCAGCGGCTCAGGGAGAGGAGAACGAACCGGAGAAAGAAGGCAAGGAGAgacggatggagggaggtagtgaGAGCCGGGGCTCGAAGGAGACCTCCGAGGTGACGGAGACGCTGGGGTTTTACGACAAGAAGAAAGTCCAGAAGGACAAGAAACGGAGTCTGTCTGatctgtCCCTAGCGAGGTTCATGGGGGCGGAGCTGACCCGAGGATACTTCCTGGAACACAATGAGGCTAAATacacagagagacgagagagggtCTATACCTGCCTCCGGATCCCCAAGGAACTAgagaagttgATGCTGTTTGGGTTCTTCCTGTGTCTGGATGCCTTCCTGTACGTGTTCACCCTGCTGCCTCTCAGAGTTCTACTGGCCCTCGTCCACCTACTGACCCTACCCTGctgtggtctgagtgggtctcctctcctccagccagCCCAGGTCTGTGATGTGTTGAAGGGTGTCATCATGGTGTTGTGTTACATCATGATGAGCTACGTGGATTACAGCATGATGTATCACCTGATCAGAGGACAGTCTGTCATCAAACTCTATATTATCTACAACATGCTGGAGGTTGCAGACAGGTTGTTCTCTTCGTTTGGTCAGGACATTCTGGACGCTCTCTACTGGACCGCAACAGAAcctaaagagaagaagagagctcATATAGGAGTTGTTCCTCACTTCCTCATGGCTGTTCTATATGTCTTTCTTCATGCTATCCTCATCATGGTTCAGGCCACTACTCTGAACGTTGCCTTCAACTCTCACAACAAGTCTCTACTCACCATCATGATGTCTAACAATTTCGTGGAGATCAAAGGAAGTGTGTTTAAGAAGTTTGAGAAGAACAACCTCTTTCAGATGTCTAACAGTGacataAAGGAGAGGTTCACTAACTATGTTCTGTTACTCATTGTCTGTCTACGGAACATGGAGCAGTTCTCATGGAACCCTGACCACCTGTGGGTGCTGTTTCCTGACGTCGTCATGGTGATAGCGTCTGAGGTTACCGTGGATGTCGTCAAGCACGCCTTCATCACCAAGTTTAACGACATCACTGCAGACGTCTACGGGGAGTACCGCGCCAGCCTGGCGTTCGACCTCGTCAGCAGCAGACAGAAAAACGCCTATACAGACTACAGTGACTCAGTCTCCAGGAGAATGGGCTTCATTCCACTGCCTTTAGCTCTGCTGtTGATCAGGGTGGTGACCAGCTCAGTGAAGATCCAGGGATCTCTCTCCTTCATGTGTGTTCTTCTCTTCTATCTGGGgatgatCTCTCTGAAGGTACTGAACAGTATCGTGTTGCTGGGAACGTCCTGTGTGTTCGTCAAAGAAGCCAATATGGAGGAGAAGCTGTTCCAGTCTCCCCCCTCTGCTGCCTCCAGCCGCTCCAACTCTAGagcacacagacccacacacaccacccccccagGTGAGCCAATCGTAGAAGAGGGGGTCGTGTCTTCAGCGTCAGTCACTTGTCAGCCAACCAACCACCAGCAAGAGAGTCCCGCCTCCACTCTGCCAACCAGCCAATCAGACGATCACTTCCTGACCACGCCCGACGGCGAGGACGGCGACAAGGACATCTCCGCGGCaacgggagaggaaggagaggggctTAAACATAGAAACCCCGCCCCCAAGAAAGACCTATTGGAGATCGACCGCTTCACTATCTGTGGAAACCGCAtcgactgacacacacacacacacaattgactGGCTGATACCATGGCAACAAGAGACTGGCCAGGGGTTAAGAGGTCGTGCACTCAGATGGACTCGCAGGACTGAACTCTGGGTATTTTATTTATTAACAACGCGGCTGTTATGTCAGCTGTCGTAGTGAGGTCGTAACACTACGTGAAGCTCCTTAAGGATCCTTACAGCTGGACTATGAAGCGTTAAGAAGAcactctgatgatgatgatggtgtttaaCACAAACTGACCGGTTGGTTTTTCCTTTAAAGATGTTTTgtcaatttgtaaaaaaaattaaaataaagacAAAAATGTCATTTTAACAGTACATTTAACCATTAATCTGCTCCAGGAGAGTGATGACAAcgaaccccacacacacaaactctctcacCATCTGGTTGGTTCCCCCCACAGACTCTCTCACCATCCTGTGTAACTGAACTGTGTTGAATGCCCCTTTAAGACTCACACTACGTGACATCACACTTCCTGGAGGaagttcacaccccttgactctattccacatgttgttgttgttaccgTCTGAATTTATAATGACTATATGTTGGGTCCCTGGGtgacacacaacaccccataatgtcatagTGGAATTATGTTGGTCTACATTTTTAACAAGTTCATTAAAaaaggaaaagctgaaat

Function

NR:

description
PREDICTED: transmembrane anterior posterior transformation protein 1 homolog isoform X2

GO: NA

KEGG:

id description
K23404 TAPT1; transmembrane anterior posterior transformation protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036971986.1 False 2465 mRNA 0.49 14 1562205 1586087
XM_036971987.1 True 2433 mRNA 0.49 15 1562205 1586087

Neighbor

gene id symbol gene type direction distance location
LOC110515474 NA coding downstream 4649 1498585 ~ 1557714 (-)
uchl1 uchl1 coding downstream 139474 1412122 ~ 1422731 (-)
LOC110514204 LOC106595830 coding downstream 152315 1347450 ~ 1409890 (-)
LOC118946997 NA coding downstream 164804 1395842 ~ 1397401 (-)
LOC110514205 tmem192 coding downstream 215330 1313420 ~ 1346875 (-)
spock3 NA coding upstream 368250 1954337 ~ 1990528 (-)
LOC110512130 LOC105009093 coding upstream 478616 2064703 ~ 2265397 (-)
LOC118946996 NA coding upstream 808808 2394895 ~ 2399378 (-)
LOC110515946 NA coding upstream 915801 2500287 ~ 2583692 (-)
LOC118947017 LOC106570794 coding upstream 920286 2506373 ~ 2585527 (-)
G2333098 NA non-coding downstream 11065 1550747 ~ 1551140 (-)
G2333097 NA non-coding downstream 13669 1547910 ~ 1548536 (-)
G2333096 NA non-coding downstream 16745 1544982 ~ 1545460 (-)
G2332999 NA non-coding downstream 69536 1458676 ~ 1492669 (-)
G2333384 NA non-coding upstream 2001 1588088 ~ 1594939 (-)
G2333381 NA non-coding upstream 2546 1588633 ~ 1594660 (-)
G2333390 NA non-coding upstream 22088 1608175 ~ 1608826 (-)
G2333382 NA non-coding upstream 66295 1652382 ~ 1653036 (-)
G2333379 NA non-coding upstream 69677 1655764 ~ 1656226 (-)
G2332980 NA other downstream 358677 1202114 ~ 1203528 (-)
G2332976 NA other downstream 368861 1193004 ~ 1193344 (-)
G2332888 NA other downstream 578199 983410 ~ 984006 (-)
G2332823 NA other downstream 778828 782943 ~ 783377 (-)
G2333385 NA other upstream 81904 1667991 ~ 1729093 (-)
G2333429 NA other upstream 154922 1741009 ~ 1741997 (-)
G2333553 NA other upstream 551879 2137966 ~ 2145017 (-)
G2333706 NA other upstream 1021012 2607099 ~ 2607590 (-)

Expression


Co-expression Network