LOC110512130 (LOC105009093)


Basic Information

Item Value
gene id LOC110512130
gene name LOC105009093
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493659.1
NCBI id JAAXML020000263.1
chromosome length 2745910
location 2064703 ~ 2265397 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036971968.1
CCCAGAGAAGGCCAGTCGGAGTTGGATCGGAGACTGTCTTCGACCAGCCGTTACCAGACGCATCTGGACTGGAGCCGCAGCACAGCAGCTAACCCGTCCTTTCCATTTAATGAATACGGACACTTTTTCAGAATTTAGTATTTAATTATTTTTCAACCTGTCGTTCAGGTGGACTCTGGATAGTTGCCTCCCTTCCCCTCACCCTTTCTACCGTGTAAAAGGAACTAAGCCATGCACCCTCCCCcgtcactcctctccctcctcctccacctctccctgtaCCCCAGTGCATGCTGGTCCTCCAGGATCATCGTAGTCCCTCCCATCATGTTTGAGTCCCATCTCTACATCTTCAAGACCCTGGCCACAGAACTCCACCTCCAGGGACATGATACTTCCATCCTGCTGTCAGAGGGGCgccaggtgcccccctccccccactacACCTTCCAGCGTTACCCAGGCATCTTCAACTCCTCCACAGCCGACAGTTTCCTCCAGTCCAAGGTCAGCAACATCTTCTCTGGTCGTCTCACGGCGTTGGAACTCTTCGACATCCTCGACCACTACGCCCAGAACTGCGACGCCGTCGTGGGAAACAAAGAGGTCATGACCCGACTCAAGGATGCCAACTTTGACCTTTTATTGGTCGACCCCAACGAGATGTGTGGGTTCGTGATTGCTCACATCCTCGGGGTTCCCTACGCTGTCTTTTCCACGGGCCTATGGTACCCAGCGGAGGTCGGGGCTCCTGCCCCTCTCTCGTACGTCCCAGAGTTCAACTCTCTCCTCACCGATCAGATGTCTCTAGTCCAGAGGATTACCAACACGGCGGTGTACCTGGTGTCCCGGTTCGGTGTTCAGTACCTGGTGTTGCCTAAGTACGAGCGCATCATGAGGAAGCACGGCGTGGAGCCGCGGGTGGCCATGCAGGATCTGGTTCAGGGGAGCAGGCTGTGGATGTTGTCTACTGATCTGGCCCTGGAGTTTCCGAGGCCCACTCTACCACATGTTGTCTATGTAGGGGGGATACTGACCAAACCTGCCAGCCCGTTACCTCAgGACTTTGAGTCGTGGGTAAATGACACGGCGGAGCATGGCTTCGTGGTCGTATCGTTTGGCGCCGGGGTCAAATACCTCTCAGAGGACATCACTCACAAACTGGCTGGAGCCCTGGGTAGGCTGCCCCAACGCGTGGTCTGGAGGTTCTCGGGGGTTCCGCCCAGTAACCTAGGCAACAATACCAAGTTGGTGGATTGGATGCCTCAAAACGACCTGTTGGGCCATGCCAGAACAGTAGTGTTCCTGTCCCACGGTGGTCTGAACAGTATCTATGAAGCGATGTACCACGGTGTCCCTGTAGTGGGACTACCTCTGTTTGGGGACCACTACGACACTATGACCCGGGTGGAGGCTAAAGGGATGGGCATCATGGTTCACTGGAAGAGTATGACAGAGGAGGAGCTGTACCAGGCACTGGCCACTGTTATCAACAATAACAagtaTCGTCAGCGTGCCCAGGTGCTCTCTTCCATCCATAAGGACCAACCAGGTCACCCGGTAACAAGAGCCGTCTATTGGATAAACTACATCCTCCGTCACCACGGCGCCAACCACTTACGATCCTCTGTCTACACTGTCCCCACCTACCAGTACTTCCTATTGGACGTTGTGCTGGTCGTAGGGGCGGGGCTGGCCCTGATTGGCTACCTGTTTTACCGGATAGCAGGGCTACTAAGGTCAAAGGTTAAGGTTCAGGAGCGGGGGGGAGAGGTTACCCACAGTGACGGCGACGACAAGGCAAACGGACATTGCCATAGCAACGGAGCGGTCGCTAATGGGAAGCACAAACGTAACGGAGTGCCGGTGAAGAACGACAAGAAGATGAAGTAAAGGGGGGCGGAGACTCTGTTCTGGGGTCAGAGGTTGGAGAGAAGGAATCTGATTTAGGGTTTAAGGGAGAACAGAACACTCCTCGTTCTGGGAgactgcagacagacagggatgagatgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtggttcgTTTCGTGGGAAGGGAAGAGGGTTTACAACCACTgcttacaaaacaacaacaacaaccaccaagGAGCTGGAAAGTCCAAaattccccccccctctctctccctcctctctttcttcctctctgtctcccctccctcctctcctccccctctctcctctcctcctctctctctctctctcctcttctctctctc
>XM_036971970.1
GACCGACACCGGACGTACATCCATGCACCCTCCCCcgtcactcctctccctcctcctccacctctccctgtaCCCCAGTGCATGCTGGTCCTCCAGGATCATCGTAGTCCCTCCCATCATGTTTGAGTCCCATCTCTACATCTTCAAGACCCTGGCCACAGAACTCCACCTCCAGGGACATGATACTTCCATCCTGCTGTCAGAGGGGCgccaggtgcccccctccccccactacACCTTCCAGCGTTACCCAGGCATCTTCAACTCCTCCACAGCCGACAGTTTCCTCCAGTCCAAGGTCAGCAACATCTTCTCTGGTCGTCTCACGGCGTTGGAACTCTTCGACATCCTCGACCACTACGCCCAGAACTGCGACGCCGTCGTGGGAAACAAAGAGGTCATGACCCGACTCAAGGATGCCAACTTTGACCTTTTATTGGTCGACCCCAACGAGATGTGTGGGTTCGTGATTGCTCACATCCTCGGGGTTCCCTACGCTGTCTTTTCCACGGGCCTATGGTACCCAGCGGAGGTCGGGGCTCCTGCCCCTCTCTCGTACGTCCCAGAGTTCAACTCTCTCCTCACCGATCAGATGTCTCTAGTCCAGAGGATTACCAACACGGCGGTGTACCTGGTGTCCCGGTTCGGTGTTCAGTACCTGGTGTTGCCTAAGTACGAGCGCATCATGAGGAAGCACGGCGTGGAGCCGCGGGTGGCCATGCAGGATCTGGTTCAGGGGAGCAGGCTGTGGATGTTGTCTACTGATCTGGCCCTGGAGTTTCCGAGGCCCACTCTACCACATGTTGTCTATGTAGGGGGGATACTGACCAAACCTGCCAGCCCGTTACCTCAgGACTTTGAGTCGTGGGTAAATGACACGGCGGAGCATGGCTTCGTGGTCGTATCGTTTGGCGCCGGGGTCAAATACCTCTCAGAGGACATCACTCACAAACTGGCTGGAGCCCTGGGTAGGCTGCCCCAACGCGTGGTCTGGAGGTTCTCGGGGGTTCCGCCCAGTAACCTAGGCAACAATACCAAGTTGGTGGATTGGATGCCTCAAAACGACCTGTTGGGCCATGCCAGAACAGTAGTGTTCCTGTCCCACGGTGGTCTGAACAGTATCTATGAAGCGATGTACCACGGTGTCCCTGTAGTGGGACTACCTCTGTTTGGGGACCACTACGACACTATGACCCGGGTGGAGGCTAAAGGGATGGGCATCATGGTTCACTGGAAGAGTATGACAGAGGAGGAGCTGTACCAGGCACTGGCCACTGTTATCAACAATAACAagtaTCGTCAGCGTGCCCAGGTGCTCTCTTCCATCCATAAGGACCAACCAGGTCACCCGGTAACAAGAGCCGTCTATTGGATAAACTACATCCTCCGTCACCACGGCGCCAACCACTTACGATCCTCTGTCTACACTGTCCCCACCTACCAGTACTTCCTATTGGACGTTGTGCTGGTCGTAGGGGCGGGGCTGGCCCTGATTGGCTACCTGTTTTACCGGATAGCAGGGCTACTAAGGTCAAAGGTTAAGGTTCAGGAGCGGGGGGGAGAGGTTACCCACAGTGACGGCGACGACAAGGCAAACGGACATTGCCATAGCAACGGAGCGGTCGCTAATGGGAAGCACAAACGTAACGGAGTGCCGGTGAAGAACGACAAGAAGATGAAGTAAAGGGGGGCGGAGACTCTGTTCTGGGGTCAGAGGTTGGAGAGAAGGAATCTGATTTAGGGTTTAAGGGAGAACAGAACACTCCTCGTTCTGGGAgactgcagacagacagggatgagatgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtggttcgTTTCGTGGGAAGGGAAGAGGGTTTACAACCACTgcttacaaaacaacaacaacaaccaccaagGAGCTGGAAAGTCCAAaattccccccccctctctctccctcctctctttcttcctctctgtctcccctccctcctctcctccccctctctcctctcctcctctctctctctctctcctcttctctctctc
>XM_036971969.1
AGCTACAAGCTGTCAAGCGGTGGTGTTGTCACCAAGACGGTCTGCCAAGTTTTTCAAGGAAAGCCATGCACCCTCCCCcgtcactcctctccctcctcctccacctctccctgtaCCCCAGTGCATGCTGGTCCTCCAGGATCATCGTAGTCCCTCCCATCATGTTTGAGTCCCATCTCTACATCTTCAAGACCCTGGCCACAGAACTCCACCTCCAGGGACATGATACTTCCATCCTGCTGTCAGAGGGGCgccaggtgcccccctccccccactacACCTTCCAGCGTTACCCAGGCATCTTCAACTCCTCCACAGCCGACAGTTTCCTCCAGTCCAAGGTCAGCAACATCTTCTCTGGTCGTCTCACGGCGTTGGAACTCTTCGACATCCTCGACCACTACGCCCAGAACTGCGACGCCGTCGTGGGAAACAAAGAGGTCATGACCCGACTCAAGGATGCCAACTTTGACCTTTTATTGGTCGACCCCAACGAGATGTGTGGGTTCGTGATTGCTCACATCCTCGGGGTTCCCTACGCTGTCTTTTCCACGGGCCTATGGTACCCAGCGGAGGTCGGGGCTCCTGCCCCTCTCTCGTACGTCCCAGAGTTCAACTCTCTCCTCACCGATCAGATGTCTCTAGTCCAGAGGATTACCAACACGGCGGTGTACCTGGTGTCCCGGTTCGGTGTTCAGTACCTGGTGTTGCCTAAGTACGAGCGCATCATGAGGAAGCACGGCGTGGAGCCGCGGGTGGCCATGCAGGATCTGGTTCAGGGGAGCAGGCTGTGGATGTTGTCTACTGATCTGGCCCTGGAGTTTCCGAGGCCCACTCTACCACATGTTGTCTATGTAGGGGGGATACTGACCAAACCTGCCAGCCCGTTACCTCAgGACTTTGAGTCGTGGGTAAATGACACGGCGGAGCATGGCTTCGTGGTCGTATCGTTTGGCGCCGGGGTCAAATACCTCTCAGAGGACATCACTCACAAACTGGCTGGAGCCCTGGGTAGGCTGCCCCAACGCGTGGTCTGGAGGTTCTCGGGGGTTCCGCCCAGTAACCTAGGCAACAATACCAAGTTGGTGGATTGGATGCCTCAAAACGACCTGTTGGGCCATGCCAGAACAGTAGTGTTCCTGTCCCACGGTGGTCTGAACAGTATCTATGAAGCGATGTACCACGGTGTCCCTGTAGTGGGACTACCTCTGTTTGGGGACCACTACGACACTATGACCCGGGTGGAGGCTAAAGGGATGGGCATCATGGTTCACTGGAAGAGTATGACAGAGGAGGAGCTGTACCAGGCACTGGCCACTGTTATCAACAATAACAagtaTCGTCAGCGTGCCCAGGTGCTCTCTTCCATCCATAAGGACCAACCAGGTCACCCGGTAACAAGAGCCGTCTATTGGATAAACTACATCCTCCGTCACCACGGCGCCAACCACTTACGATCCTCTGTCTACACTGTCCCCACCTACCAGTACTTCCTATTGGACGTTGTGCTGGTCGTAGGGGCGGGGCTGGCCCTGATTGGCTACCTGTTTTACCGGATAGCAGGGCTACTAAGGTCAAAGGTTAAGGTTCAGGAGCGGGGGGGAGAGGTTACCCACAGTGACGGCGACGACAAGGCAAACGGACATTGCCATAGCAACGGAGCGGTCGCTAATGGGAAGCACAAACGTAACGGAGTGCCGGTGAAGAACGACAAGAAGATGAAGTAAAGGGGGGCGGAGACTCTGTTCTGGGGTCAGAGGTTGGAGAGAAGGAATCTGATTTAGGGTTTAAGGGAGAACAGAACACTCCTCGTTCTGGGAgactgcagacagacagggatgagatgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtggttcgTTTCGTGGGAAGGGAAGAGGGTTTACAACCACTgcttacaaaacaacaacaacaaccaccaagGAGCTGGAAAGTCCAAaattccccccccctctctctccctcctctctttcttcctctctgtctcccctccctcctctcctccccctctctcctctcctcctctctctctctctctcctcttctctctctc

Function

NR:

description
2-hydroxyacylsphingosine 1-beta-galactosyltransferase-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG:

id description
K04628 CGT, UGT8; ceramide galactosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036971968.1 False 2242 mRNA 0.55 7 2064703 2165345
XM_036971970.1 False 2033 mRNA 0.56 7 2064703 2167118
XM_036971969.1 True 2076 mRNA 0.55 7 2064703 2265397

Neighbor

gene id symbol gene type direction distance location
spock3 NA coding downstream 74175 1954337 ~ 1990528 (-)
LOC118947002 LOC105007586 coding downstream 478616 1562205 ~ 1586087 (-)
LOC110515474 NA coding downstream 507147 1498585 ~ 1557714 (-)
uchl1 uchl1 coding downstream 641972 1412122 ~ 1422731 (-)
LOC110514204 LOC106595830 coding downstream 654813 1347450 ~ 1409890 (-)
LOC118946996 NA coding upstream 129498 2394895 ~ 2399378 (-)
LOC110515946 NA coding upstream 236491 2500287 ~ 2583692 (-)
LOC118947017 LOC106570794 coding upstream 240976 2506373 ~ 2585527 (-)
LOC118947018 NA coding upstream 247955 2513352 ~ 2515174 (-)
LOC118947010 NA coding upstream 433442 2698839 ~ 2741820 (-)
G2333527 NA non-coding downstream 7452 2057040 ~ 2057251 (-)
G2333526 NA non-coding downstream 16892 2047608 ~ 2047811 (-)
G2333525 NA non-coding downstream 65173 1999294 ~ 1999530 (-)
G2333524 NA non-coding downstream 70367 1994038 ~ 1994336 (-)
G2333441 NA non-coding downstream 88501 1787802 ~ 1976202 (-)
G2333582 NA non-coding upstream 4576 2269973 ~ 2270216 (-)
G2333592 NA non-coding upstream 61885 2327282 ~ 2363568 (-)
G2333594 NA non-coding upstream 78031 2343428 ~ 2348476 (-)
G2333598 NA non-coding upstream 93536 2358933 ~ 2361906 (-)
G2333605 NA non-coding upstream 114699 2380096 ~ 2380670 (-)
G2333429 NA other downstream 322706 1741009 ~ 1741997 (-)
G2333385 NA other downstream 392730 1667991 ~ 1729093 (-)
G2332980 NA other downstream 861175 1202114 ~ 1203528 (-)
G2332976 NA other downstream 871359 1193004 ~ 1193344 (-)
G2333706 NA other upstream 341702 2607099 ~ 2607590 (-)

Expression


Co-expression Network