LOC110515946


Basic Information

Item Value
gene id LOC110515946
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493659.1
NCBI id JAAXML020000263.1
chromosome length 2745910
location 2500287 ~ 2583692 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005041636.1
ACATCACTTCACCACCCTGacaactgacccccccccccccccccaccctctcctccctgttgCCTGGGCAACAAGAACATTGAAGGTACACTGAAGTATTTCCGAAGAGGTTTTATGTTTCTGTTGTTAGTTTTCTGAAATAGAAAAAGAAAGATAACATTTTACTTTGTTTTTTCAAACTTTAGTTTAAAACAACACAAATATAACAAAATAAAAActaaaatgagaagaaaaaaatactaCAGAAACTACTGAAGACTTTTTATTTGTTTTGAATTTATTATTAAAAGAGATTGTATTTTAAAGTTGTTTTCATTAATCCATTCATGCTGTTAGCTTCATAGATGAGTTTGCTTGTTGTTGGGGGTATCTATTAGTTTTCAGATACTGTAATACTGGGTATCATTTAAAAAAACGTGTATTTTTTATGGGTGTTTTTAGATGTGTTATAGTTCTGTTCTGGAACATGGCCTGTCACTTCACTGTCTCCTCCAGCAGACTAAGactgaattgttttattttatcatgttgttgttgttgttgttgttgttctgtacTTTATTCTAATTGTTTGTAATTGCTTGATTCTCACATGGTGAACAAATATGGACAAAGgcgtttattattttgtattgctCTGCCCTAACACTCTCTAGCGCTAGCATATGCTACGTACGCTAAGCTAACTGCTAAACTAGCATATGCTACGTGCTAAGCTAACTGTTAAACTAGCATATGCTACGTGCTAAGCTTACCGAAACACCCTGTTAGCTTTATGCTAAGCTTACCGAAACACCCTGTTAGCTTTATGCTAAGCTAGCAGCATCACACTCCGCTGAGCTTCAACCGACTGTAAAGCCTTTCTACCGCAGTGCCTTTCTACTAGAGATCTGTGTCTCTCTGGGTTCGACTATTGTGCCTTTCCACTAGCCCGGTCTTATGATCTCTGAGCTCAACTGCAGTGCCTGTTGAGTGGAAATGTGCTTAACTCTCTACACTACACTAGCATTTCACAGAATTACTACATGCCCAATAGACTGCTTCGTTCTCAGCGGTAGCTGGTCGTTGGAACAGAGACTATGGTCAGGATTTAATCCCAAACCGCTTGACGTTTAGAGGTCATTTCCAATTAGACCTTCCTCATCTGAGGTGGAATCAACCTTCCTCATCTGAGGTGGAATCGACCTTCCTCatctgaggtggaaggtgaccttcCTCatctgaggtggaaggtgaccttcCTCATCTGAGGTGAAATCGACCTTCCTCATCTGAGGTGGGAAGGTGacagagctacagcggtgtttgtcaagAGATCGTGGTGAAACATCCCTGTTGGTCTTCTCACAAATACTTCTCTAGCGTCCTAACGAGTCAGATtggaccatcttaaaacaattccatatgtaaCCAGATTGTACGATTTAGTTAGTTTAGTTGGAACTCAGGGCCCTTAGACCCCTTTTTCTAACAGCTTTGTGATGGGGAATATAATTATATTGAAACTAACCTTCCAACTGGAACCAAGccttagagacacacacacaggttctctcttccctctgtaaCTCCTGTCAGGCTGACTTGACCTGCTGGTAACTAACACACATCAGCCTCCAGATCCAACGTGAAAACAATTGGAACTAAGCcttagagacacagacacaggttctctcttccccctcacaGTGTTCCTCTGTAACTCCTGTCAGGCTGACCTGACCTGCTGGTAACTAACACACATCAGCCTCCAGATCCAACGTGAAAACAATTGGAACTAAGCcttagagacacagacacaggttctctcttccccctcacaGTGTTCCTCTGTAACTCCTGTCAGGCTGACCTGACCTGCTGGTAACTAACACACATCAGCCTCCAACGTGAAAACAACTGGAACCAAGCcgtagagacacagacacaggttctctcttccctctgtaaCTCCTGTCAGGCTGACCTGACCTGCTAGTAACTAACACACATCAGCCTCCACATCCAACGTGAAAACAACATCAAAAAAGCTGCTACACGAGGCTGacaaatgtttgtttgttgggagagaagaagaagagagagagagagaacctcaaACTACATGTTGCCGTCCTAGTATCAC
>TU2669558
CCTctaacctccccccccccccccccccccaccctctcctccctgttgCCTGGGCAACAAGAACATTGAAGGTACACTGAAGTATTTCCGAAGAGGTTTTATGTTTCTGTTGTTAGTTTTCTGAAATAGAAAAAGAAAGATAACATTTTACTTTGTTTTTTCAAACTTTAGTTTAAAACAACACAAATATAACAAAATAAAAActaaaatgagaagaaaaaaatactaCAGAAACTACTGAAGACTTTTTATTTGTTTTGAATTTATTATTAAAAGAGATTGTATTTTAAAGTTGTTTTCATTAATCCATTCATGCTGTTAGCTTCATAGATGAGTTTGCTTGTTGTTGGGGGTATCTATTAGTTTTCAGATACTGTAATACTGGGTATCATTTAAAAAAACGTGTATTTTTTATGGGTGTTTTTAGATGTGTTATAGTTCTGTTCTGGAACATGGCCTGTCACTTCACTGTCTCCTCCAGCAGACTAAGactgaattgttttattttatcatgttgttgttgttgttgttgttgttctgtacTTTATTCTAATTGTTTGTAATTGCTTGATTCTCACATGGTGAACAAATATGGACAAAGgcgtttattattttgtattgctCTGCCCTAACACTCTCTAGCGCTAGCATATGCTACGTACGCTAAGCTAACTGCTAAACTAGCATATGCTACGTGCTAAGCTAACTGTTAAACTAGCATATGCTACGTGCTAAGCTTACCGAAACACCCTGTTAGCTTTATGCTAAGCTTACCGAAACACCCTGTTAGCTTTATGCTAAGCTAGCAGCATCACACTCCGCTGAGCTTCAACCGACTGTAAAGCCTTTCTACCGCAGTGCCTTTCTACTAGAGATCTGTGTCTCTCTGGGTTCGACTATTGTGCCTTTCCACTAGCCCGGTCTTATGATCTCTGAGCTCAACTGCAGTGCCTGTTGAGTGGAAATGTGCTTAACTCTCTACACTACACTAGCATTTCACAGAATTACTACATGCCCAATAGACTGCTTCGTTCTCAGCGGTAGCTGGTCGTTGGAACAGAGACTATGGTCAGGATTTAATCCCAAACCGCTTGACGTTTAGAGGTCATTTCCAATTAGACCTTCCTCATCTGAGGTGGAATCAACCTTCCTCATCTGAGGTGGAATCGACCTTCCTCatctgaggtggaaggtgaccttcCTCatctgaggtggaaggtgaccttcCTCATCTGAGGTGGAATCGACCTTCCTCATCTGAGGGGGAATCGACCTTCCTCATCTGAGgtggaaggtgaccttcCTCATCTGAGGTGAAATCGACCTTCCTCATCTGAGGTGGGAAGGTGacagagctacagcggtgtttgtcaagAGATCGTGGTGAAACATCCCTGTTGGTCTTCTCACAAATACTTCTCTAGCGTCCTAACGAGTCAGATtggaccatcttaaaacaattccatatgtaaCCAGATTGTACGATTTAGTTAGTTTAGTTGGAACTCAGGGCCCTTAGACCCCTTTTTCTAACAGCTTTGTGATGGGGAATATAATTATATTGAAACTAACCTTCCAACTGGAACCAAGccttagagacacacacacaggttctctcttccctctgtaaCTCCTGTCAGGCTGACTTGACCTGCTGGTAACTAACACACATCAGCCTCCAGATCCAACGTGAAAACAATTGGAACTAAGCcttagagacacagacacaggttctctcttccctctgtaaCTCCTGTCAGGCTGACCTGACCTGCTAGTAACTAACACACATCAGCCTCCACATCCAACGTGAAAACAACATCAAAAAAGCTGCTACACGAGGCTGacaaatgtttgtttgttgggagagaagaagaagagagagagagagaacctcaaACTACATGTTGCCGTCCTAGTATCACTCTCTATTCACACCCACCGGTATGACAGACAGCTTGCCCGTCCATGTCTCTATTGAAGTCTTTTGGGTTAGTATCACTCTCTATTCACACCCACCGGTATGACAGACAGCTTGCCCGTCCACGTCTCTATTGAAGTCTTTTGGGTCAGTGTAGTATTTGTCTTTATTTGTAGTGGGGGTGTTAGTTGTGTTGATGCTGGTGAACTTGAAGGAGATAAACAGTTGGGATGTAAATGGATTCAACAGTATTTTGGGAATATCAGGCccaactgtctctctgtctggcctgtaaagagtctctctctctctctctctctgtctgttttgtatagagtctctctctctcactctctctctctgtctggcctgtaaagagtctctctctctctctgtctgttctgtaaagagtctctctctctctctctgtctgttctgtaaagagtctctctctctctctctgtctgttctgtaaagagcctctctctctctctttctctctctctctctctctctctatgtttctctctgtctgttctgtaaagagtctctctctctctctctctctgttctgtagtctatttctctctctctctctctctctctctctctctctgtctggcctgTAAAGGGTTTCTCTCTCTCAAGAAAAACTGGAATTTCATTAAATACCGACGAGTAACTTTTATTGCGTTGTTTTATGATGACAAGAAGTCAGGATATATTTAATATATTcattatgtgttgttgtttatgacGTCAGAAGAAATGCTATAATATATTCCAAGAGTAAACATGGATTCTTTCCTTTAAATAGAGTTTAGAGATCAaactaaaatacattttaaaaacttgtttttttttcttctcaaaaaaaactaaacatgtCCAATTAGTTTGAACATTTTAAATTTGTGATGTAATTTGCTGTATTATGTTAACAATGTAATGTAGAATTAGTTGTTTTTATGTTGGGTGTTGTGTTTAGTGTGAGGACAGAGATATCAGGCTGTTTTGTGTGGAGGTCTATGGAGCCGTTCAGAATGAACAGAGCTGAGTGAAACTGACCTCTACCGACCCCCCTCCCTCACACCCCCAtcaaacccacacacacccctccctcacccccccccctcagacACTCCCCGCCCCCCACCTGTAGGTTTGAACACCTGGCGTGTCGTCTCCATCTCCAACAGAACAACACGTGCCTCGTTAAAGAAATAACATTATTAATAATAACACTGTAAACTGTTCTTAGTGTGCCTTATTGCCAAACTGTGCTCCTGGTGTCCCTGTTTAGACCTGGGACCGGTTTTCTATGCTCCTGGTGTCCCTGTTTAGACCTGGGACCGGTTTTCTATGCTCCTGGTGTCCCTGTTTAGACCTGGGACCGGTTTTCTATGCTCCTTGTTATTTTTCAGCTTGTTGTATTTATAGTGGTTAACTAGATAAATAAAGCATTTTCAAAAAATAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005041636.1 False 2125 mRNA 0.42 2 2501888 2504138
TU2669558 True 3398 lncRNA 0.42 7 2500287 2583692

Neighbor

gene id symbol gene type direction distance location
LOC118946996 NA coding downstream 102510 2394895 ~ 2399378 (-)
LOC110512130 LOC105009093 coding downstream 236491 2064703 ~ 2265397 (-)
spock3 NA coding downstream 511360 1954337 ~ 1990528 (-)
LOC118947002 LOC105007586 coding downstream 915801 1562205 ~ 1586087 (-)
LOC110515474 NA coding downstream 944332 1498585 ~ 1557714 (-)
LOC118947017 LOC106570794 coding upstream 2235 2506373 ~ 2585527 (-)
LOC118947018 NA coding upstream 9214 2513352 ~ 2515174 (-)
LOC118947010 NA coding upstream 194701 2698839 ~ 2741820 (-)
G2333638 NA non-coding downstream 33063 2466130 ~ 2468825 (-)
G2333520 NA non-coding downstream 48278 2451845 ~ 2453610 (-)
G2333517 LOC106596818 non-coding downstream 51420 2449251 ~ 2450468 (-)
G2333625 NA non-coding downstream 62319 2439003 ~ 2439569 (-)
G2333615 NA non-coding downstream 94849 2405768 ~ 2407039 (-)
G2333521 NA non-coding upstream 7394 2511532 ~ 2513611 (-)
G2333650 NA non-coding upstream 29074 2533212 ~ 2534533 (-)
G2333651 NA non-coding upstream 31587 2535725 ~ 2536686 (-)
G2333652 NA non-coding upstream 34807 2538945 ~ 2539356 (-)
G2333658 NA non-coding upstream 62872 2567010 ~ 2567912 (-)
G2333553 NA other downstream 356871 2137966 ~ 2145017 (-)
G2333429 NA other downstream 759891 1741009 ~ 1741997 (-)
G2333385 NA other downstream 829915 1667991 ~ 1729093 (-)
G2332980 NA other downstream 1298360 1202114 ~ 1203528 (-)
G2333706 NA other upstream 102961 2607099 ~ 2607590 (-)
G2333703 NA non-coding upstream 16673 2600365 ~ 2600740 (-)
G2333707 NA non-coding upstream 24705 2608397 ~ 2608943 (-)
G2333709 NA non-coding upstream 26994 2610686 ~ 2610901 (-)
G2333710 NA non-coding upstream 31480 2615172 ~ 2615517 (-)
G2333711 NA non-coding upstream 33905 2617597 ~ 2617883 (-)

Expression


Co-expression Network