XLOC_004216


Basic Information

Item Value
gene id XLOC_004216
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 32150218 ~ 32157526 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008814
CCAGGAGGCACCGTCCTCCCTTTCCTAACCTCAGCCGCCTCTCAGGTAACCGTGCAGAAaatgagatttctgaatgaaCAAGAGGATGTGCAACAACATATGCACCCTTTTAATGAGCCAAACCGAGAGAGTAAagggagtttaaaaaaaaaaagaagtgacaTTTGTCTGTTCCAAAGCCAAACTAAGAGTACTTCGCATTTccttattttatttgaaacatttcacCAAAGAATGTCAAGTTAATAATGTCTATCCAATAAGACGAATGATGTTTGAAAGAATCAGAAAGGTGATGCGAGTGCAGTAAGTCCGAGGAGAATGAGAGagcaagaaagagagagagagatgtgattTCACAGGTAATCTCATTCTGATGTCACGGCTGATTGAGAGCAATAAAGAGGAAAATCATATCAGGAATGGCAGAACAGAAAACATCATGAGGATAAATGTGAAAACTCGCCAATTATataatgagaaataaaaaaatgcactcaaagacacaaacacaaaagaaatcacaaacaaaaacaaataaaggatGAACTGTTTGGAAAAGCAGCAGGTCTGAGAACAAATGTGCGTTAGAGAACTGTGCACTATTATTACTGAGGTTTGCTATGTAGTACAGATACTCCTGGCCAATGGGAATCTGCTGTCAGTGGCTCTTATAATACAGAAGTGCTGCTCTTGCATAGTACCGTCACTCTAGAGGGGACGCAACTCAACTAATACattcaatttttatttcaaaaatagaacaaattaatgatacattaataataatgattaattataaacattttcatgcataataaaactttttttctctttgattAATCTGATTAGATATATATGAATACAAACAAGGAGATTCACACTGAAGACAGTTATTCATTTTGATAATAATCATCATTTTATAGTTACTATACCCCTATTTTAATTGTCATCAATTGCTTTCCTTCATATCGTTCCAAACAGACTTTTGGGAAGGCtttttttgatggtccctattgcacattgtGTTGACTAGAAGCTGCAATGCAaatgcaactacatgccaattaattctcatttgagtataagtagactgtctgcttcatATCTGCTGATACAGCTCCTTCAACAGACTGACTATAagacactttgcaagtacatgtcaacttgcactaaccctaaacccctaacctcaacctcacagtctacttataatctaatgagaattagttggcatgcagatgcaacGTAACTTCAGTTCAACAAAATGCATGAAAgggaacatcaaaataaagtgataacgACTTTTGTTCATATTCAGAATACAAATGTAGATTTTCAACAAAATATAAATGTCTAAAAGTCTGTATTCACTTTAAATGATGAACTCTATATGAACTCTATGTGATTTAATTCAGGTTTTTATCCACATATATACTCTGATGACTTAACGTAAACAGAAGCAGAACCTGCTTTGTGTATGAGAGATCTCCTCGTTAGTTCTTCAGGAAGCTAAAATGTAACATGTGACAAAGGACATTGGTTCTCACATCGTTTACAGTGACCGAATTTGAATACTATAGCTAGTTGATGATTGTAAAAGCCTGGAATTaatcaaataatcatattaaactTCCAGTAGTGCATAGAATTTAAATGGATGGTCTCTCAAGTTCTGAAGATGAGTACATATCTTCAGGAATTGGAACAAAAGAAGAGgacgaatgaatgaaagattcaTTTTAGAGTGAACAAACCTTTAAGGAATTAGATATATTGCAAAAGAAGCTAAAAAAATATGGAGTAAAATGTGTCTGGATACAGAAAATATGAATTATATATGACACATCTGAACTGCTCAAGTGAAAATATGCACATCAGAGCTCtttaaagagcagcaaagccGTTTTAAAGAGTAATAACTGTACTGTTTATGACATAAAAAAGTCGAGCGCTTAGCCCAAAGGTCATGCTAAACTGTCTGGTAATTAgctgcttaataaaaaaaaaaaaaaaaaaaaaaaaaacagcggcAGACCTTCATCCTGGCCCTGACCGGCACAAAGACTCGCACTTCTGTGGACAACAAGTCTGTTGTTGGAGGTAAAAGGGCAGAGGAGACGGATGGGAAAGGTTAATTGTTAagacttttcatatatatataatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctcataaCCTGCCGGCATTTATTAGCAAAAGGTGACTGTGAGCTTTGTGTTTCGTTTTTGTGTCCGTGTCACCGCAGCGACTACAGAGGTCAAACCCAAGAGGTGATGTCATCATAGGGCACGCAGGCGGGCGAGCAAGGCCTCGACGTCGCTGTCACCATTGGATGAGCAAAGCATGGGAGTTTGCTCTTTTTCCTTCTCTCGCTCTTTggctttttctttctctctctcaggcCGGTGGGTCGGCTTGTGGGCTGCAGACGGATGGGGTTCGCTCTCGTAATGAGGCTCCTTGGCAGTGGGTGCTCGTGTCGAGTTTAAATTGATATTCTGCCGCGACCGTGACCTTTGCAGAGATGCCTTCATGTTTTCTGCAGGAAGGataggagagagaaaaaaacagTTGAAACTTCGAGATGAATGTGCTGGAGCAAAAATCTTCAGCTGACCTTGCTTTGACCTG
>TCONS_00008815
cttataatctaatgagaattagttggcatgcagatgcaacGTAACTTCAGTTCAACAAAATGCATGAAAgggaacatcaaaataaagtgataacgACTTTTGTTCATATTCAGAATACAAATGTAGATTTTCAACAAAATATAAATGTCTAAAAGTCTGTATTCACTTTAAATGATGAACTCTATATGAACTCTATGTGATTTAATTCAGGTTTTTATCCACATATATACTCTGATGACTTAACGTAAACAGAAGCAGAACCTGCTTTGTGTATGAGAGATCTCCTCGTTAGTTCTTCAGGAAGCTAAAATGTAACATGTGACAAAGGACATTGGTTCTCACATCGTTTACAGTGACCGAATTTGAATACTATAGCTAGTTGATGATTGTAAAAGCCTGGAATTaatcaaataatcatattaaactTCCACAAAAGGTGACTGTGAGCTTTGTGTTTCGTTTTTGTGTCCGTGTCACCGCAGCGACTACAGAGGTCAAACCCAAGAGGTGATGTCATCATAGGGCACGCAGGCGGGCGAGCAAGGCCTCGACGTCGCTGTCACCATTGGATGAGCAAAGCATGGGAGTTTGCTCTTTTTCCTTCTCTCGCTCTTTggctttttctttctctctctcaggcCGGTGGGTCGGCTTGTGGGCTGCAGACGGATGGGGTTCGCTCTCGTAATGAGGCTCCTTGGCAGTGGGTGCTCGTGTCGAGTTTAAATTGATATTCTGCCGCGACCGTGACCTTTGCAGAGATGCCTTCATGTTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008814 False 2666 lncRNA 0.38 3 32150218 32157526
TCONS_00008815 True 775 lncRNA 0.41 2 32154954 32156318

Neighbor

gene id symbol gene type direction distance location
XLOC_004215 AL844172.2 coding downstream 277590 31869020 ~ 31872628 (-)
XLOC_004214 man2b1 coding downstream 874138 31258116 ~ 31276080 (-)
XLOC_004213 nacc1b coding downstream 915634 31218956 ~ 31234584 (-)
XLOC_004212 NA coding downstream 938910 31204925 ~ 31211308 (-)
XLOC_004211 NA coding downstream 947379 31200219 ~ 31202839 (-)
XLOC_004217 NA coding upstream 208386 32365912 ~ 32391388 (-)
XLOC_004218 NA coding upstream 299790 32457316 ~ 32563722 (-)
XLOC_004219 NA coding upstream 315257 32472783 ~ 32473383 (-)
XLOC_004220 pcdh17 coding upstream 418774 32576300 ~ 32723851 (-)
XLOC_004221 BX000696.1 coding upstream 573639 32731165 ~ 32737593 (-)
XLOC_004063 CR854846.1 misc downstream 16022540 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 19458527 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 19528451 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 19558922 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 19636956 12512966 ~ 12513262 (-)
XLOC_004200 CR318645.1 non-coding downstream 2048961 30101142 ~ 30101257 (-)
XLOC_004198 CU652893.1 non-coding downstream 2188317 29961114 ~ 29961901 (-)
XLOC_004193 NA non-coding downstream 2412971 29734578 ~ 29737247 (-)
XLOC_004222 NA non-coding upstream 652445 32809971 ~ 32942872 (-)

Expression


Co-expression Network