LOC110532874 (LOC105026297)


Basic Information

Item Value
gene id LOC110532874
gene name LOC105026297
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493660.1
NCBI id JAAXML020000588.1
chromosome length 1886234
location 328206 ~ 359539 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036972089.1
actacacctgttgattatgaagcatgtgacaaataacatttgattagatCTGATGGTTTGCCACCAGAGGTGAAAGTAGGAGCCTGCAGCATATTGTCACATTTCAAATGAAGCATTTACTGTCCTTGTCCTTTATTTGTGATGAAAATAGAGATGAACGTGATGAAAAGGCGACAGAGGTTTCATAGGAGCTGCGACACAGGGCGCAGCAGAGTAATCTGGTTACATCAACCGTCATTTAATTCATTTTTTCTGCTAATCCCTGCTCTATGTCCTCTGCCCTGAGGCTGAATAAACACACGTGGCCTGTTACATCAGTAACGCATTAATAATTAAATAACGTGtctaatagataatgtcatgttctctcctttttctccatTTCTTTCCGTTTATCCACTGCGTCTCAGCGGGGACCGTTTGTCCAAGTAGTGCCGTGCCATGCTGCTGTGCTGAAGCTGCTTGAGCACTGGAAGGGGACccgagaggagcaggggaggggatcagaggaggaagggaggggaggaggggcggGGAGCACTGAGCACAGCGAGTGACTGGACTGTGTATTGAAGGTGAAGATCAGTCCAGcaccacaaagagacaacagTAGGAGACGTTGTAAAGGCCATGGAGGTTCCGCGTGTGGACGACAGCACCAGCAGCCCTGTCAGCCGTTGTGACGACATGATGAAGAACCTGAATTTGGACTTGATACAGCCGAGTGACAGGGAAGGAGACAACTCTCAGGACAGCAGCATCGTGGAAAAGGAGGATCTTCCTGTTCCTCAGAACGTCAAGATCACCAACATCACCTGTGACTCCTTCAAGATCAACTGGGACATGGACTGTAGAGCCAAGGACCACATCACTAACTACTTCATAGACCTCAACAAGAAGGAGCACAATAACTCCAACAAGTTCAAACACAAGGATGTCCCCACTAAGCTGGTGGCGAAGGTGGTGCCACTGCCCATGACAGTGAGAGGCCACTGGTTCCTGAGCCCCAGGACAGATTACACTGTAGCTGTCCAGACTGCCTCCAAACAGAGTGACGGGAACTATGCTGTCTCTGAATGGAGTGAGATCATCGAATTCTACACTGCAGACTACTCTACTGTGCATCTGATACAGTTGCTGGAGAAGGCCGAGGTGATAGCTGGTAGGATGTTGAGATTCTCAGTGTTTTATCGGAACCAGCAGAATGACTACTTCAATAAAACGAGAGAGACACAGGACAACCGGATGCTCCCGACTGTAAAGGACAACAGTGGCAGCCACGGCTCTCCCATCAGTGGCAAGCTGGAAGGCATCTACTTCAGCTGCAACACGGAGTTCAACACAGGCAAGCCCCCCCAGGACTCCCCCTACGGACGCTACCGCTTCGAGATCCAGGCCGAGGTCCTGTTCAACCCCAAGACCAACCTGTACTTCGGGGACTTCTACTGCATGTACACAGCCTACCACTACGTGATCCTGGTGCTGGCCCCAGAGGGCTCCCCAGGGGACCGATTCTGTAAGGGCCGCCTCCCGGCGCTGGACATCTTAGACAACTGCTTCCTGACATGCacccaggaggaggaggagggggggcggCTGGTGTTCCACCACGCCCAGGATGTGATTCTCGAGGTGATTTACACCGAGCCCGTGGACCTGGCCCTAGGCAGCGTGGAGGAGATCCAAGGACACCAGCTCAGTAGCATGTCCACCATCAATGCTAAGAAGGACCCCAGTTGTAAGACCTGCAACATCAGCGTGGGACGCTAACCAGCAAAccgtggggagggagggggcgtTACTACGAGGTCCCTGCAGTTCTACGGAAAATAATACTTCTCTAACCCTATTGGCTGTGGTGATTCTCTAATCCTATTGGCTGTGGTGATTCTCTAACCCTATTGGCTGTGGTGATTCTCTAACCCTATTGGCTGTGGTGATTCTCTAAACCTACTGGCTGTGGTGATTCTCTAACCCTACTGGCAGTGATGCTTCTCTAACCCTATTGGCTGTGGTGATTCTCTAACCCTATTGGCTGTGGTGATTCTCTAACCCTATTGGTTGTGGTGATTCTCTAACCCTACTAGCTGTGGTGATTCTCTAACCCTACTGGCAGTGATGATTCTCTAACCCTATTGGCTGTGGTGATTCTCTAACCCTATTGGCTGTGGTGACTCTCTAACCCTACTGGCTGTGATGATTCTCCAACCCTACTGGCTGGTGTGACTCTCTAACCCTATTGGCTGTGGTGATTCTAACAGTCATATTATACATATTAACAGTCTAACAGTCATATTATACAGGTGCAATGTAATGATATGCCAAAGGTAACAAAACCTTGACCAAGCTGCTAGAAACAGGCCGTGGTAACAGCTTCAACAAGGCATAATGGATTAGTATTACGTAACATGGTCTTGCAATGGAATGTGATTACTTGATCATTCTAATGTTATCTTGTAATGGAATGTGATTTCTGGATGATTCTACGGTAGTGATTAAATCCGATCGTGGGTTATAGGTATTGCGGTTTTTAAAGACAAGTTCCTATGAAGCTGACATATCCAGCGTTTACAGTGAATGGGATCTCCACGAATGAAGGAACAATACCTATAACCCGCAATgggattgaatcccagcctgaAGCATGGCAGGTTGCAGCATTACACTGATGTCAGTCTGATGTCTTCACATCCTCGTTGTTGTCTGATGGGTTCTGTGTTATATGTATTGCAATCATTAACAGAAACCACATTATCCTGTGTTCAACATAATAAACATCA

Function

NR:

description
phytanoyl-CoA hydroxylase-interacting protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036972089.1 True 2780 mRNA 0.48 5 328206 359539

Neighbor

gene id symbol gene type direction distance location
LOC118936623 LOC106594258 coding upstream 16272 278449 ~ 311934 (+)
LOC110531292 LOC105026292 coding upstream 51908 272779 ~ 276298 (+)
LOC110514391 entpd1 coding upstream 153971 104494 ~ 174235 (+)
trnav-uac-159 NA coding upstream 227343 100437 ~ 100960 (+)
trnav-uac-158 NA coding upstream 228156 99978 ~ 100050 (+)
LOC110518885 LOC106591053 coding downstream 182516 542055 ~ 556835 (+)
LOC118947023 NA coding downstream 217514 576994 ~ 579312 (+)
cabcoco1 LOC106604008 coding downstream 396848 756387 ~ 770485 (+)
LOC110513287 arid5b coding downstream 453563 813079 ~ 914025 (+)
LOC110511817 LOC106591225 coding downstream 640782 1000321 ~ 1002185 (+)
G2333898 NA non-coding upstream 5600 321491 ~ 322606 (+)
G2333899 NA non-coding upstream 7986 319440 ~ 320220 (+)
G2333896 NA non-coding upstream 20659 303383 ~ 307547 (+)
G2333915 NA non-coding upstream 31412 296082 ~ 296794 (+)
G2333914 NA non-coding upstream 34580 291595 ~ 293626 (+)
G2333917 LOC106577182 non-coding downstream 11721 371260 ~ 372862 (+)
G2333931 NA non-coding downstream 29907 389446 ~ 390194 (+)
G2333932 NA non-coding downstream 31043 390582 ~ 392449 (+)
G2333933 NA non-coding downstream 33036 392575 ~ 393617 (+)
G2333934 NA non-coding downstream 34100 393639 ~ 396137 (+)
G2333918 NA other downstream 17260 376799 ~ 384255 (+)
G2333965 NA other downstream 99839 459378 ~ 463991 (+)
G2333977 NA other downstream 123547 483086 ~ 483516 (+)

Expression

LOC110532874(LOC105026297) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 0.4.
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LOC110532874(LOC105026297) Expression in each Bioproject

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LOC110532874(LOC105026297) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 200.
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Co-expression Network