Item | Value |
---|---|
gene id | LOC118947070 |
gene name | cacng2 |
gene type | misc |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NW_023493661.1 |
NCBI id | JAAXML020000899.1 |
chromosome length | 1874749 |
location | 78093 ~ 135881 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
symbol | description |
---|---|
cacng2 | Predicted to enable channel regulator activity and voltage-gated calcium channel activity. Predicted to be involved in several processes, including neurotransmitter receptor internalization; neurotransmitter receptor transport, postsynaptic endosome to lysosome; and postsynaptic neurotransmitter receptor diffusion trapping. Predicted to act upstream of or within several processes, including membrane depolarization; membrane hyperpolarization; and neuromuscular junction development. Predicted to be located in endocytic vesicle membrane and plasma membrane. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in glutamatergic synapse; hippocampal mossy fiber to CA3 synapse; and postsynaptic density membrane. Predicted to be integral component of postsynaptic density membrane. Implicated in autosomal dominant non-syndromic intellectual disability 10. |
description |
---|
PREDICTED: LOW QUALITY PROTEIN: voltage-dependent calcium channel gamma-3 subunit |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_036972137.1 | False | 4294 | mRNA | 0.54 | 5 | 78093 | 135881 |
TU2671830 | False | 1160 | lncRNA | 0.52 | 2 | 79114 | 80436 |
TU2671825 | False | 1031 | lncRNA | 0.52 | 2 | 79243 | 80436 |
TU2671834 | False | 1690 | TUCP | 0.52 | 3 | 79243 | 119404 |
TU2671823 | False | 893 | lncRNA | 0.50 | 2 | 79381 | 80436 |
TU2671831 | False | 1077 | lncRNA | 0.50 | 2 | 79381 | 80620 |
TU2671827 | True | 368 | TUCP | 0.52 | 2 | 80728 | 119404 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC118947066 | NA | coding | upstream | 53992 | 18600 ~ 24101 (+) |
LOC118947073 | prkcb | coding | upstream | 64071 | 3168 ~ 14022 (+) |
LOC110513551 | LOC106594963 | coding | downstream | 38621 | 174502 ~ 230300 (+) |
LOC118947074 | NA | coding | downstream | 71825 | 207706 ~ 209017 (+) |
LOC110517481 | LOC106592132 | coding | downstream | 110643 | 246524 ~ 331205 (+) |
LOC118947061 | dctn5 | coding | downstream | 211200 | 347081 ~ 355770 (+) |
LOC110512628 | cacna1h | coding | downstream | 590483 | 726364 ~ 881560 (+) |
G2335116 | NA | non-coding | upstream | 31644 | 44715 ~ 46449 (+) |
G2335117 | NA | non-coding | upstream | 33520 | 43294 ~ 44573 (+) |
G2335108 | NA | non-coding | downstream | 2123 | 134228 ~ 141803 (+) |
G2335110 | NA | non-coding | downstream | 9581 | 145257 ~ 145782 (+) |
G2335228 | NA | non-coding | downstream | 35233 | 171114 ~ 171504 (+) |
G2335238 | NA | non-coding | downstream | 48852 | 184733 ~ 187123 (+) |
G2335239 | NA | non-coding | downstream | 64353 | 200234 ~ 200724 (+) |
G2335554 | NA | other | downstream | 860897 | 996778 ~ 999193 (+) |
G2335635 | cacng3 | other | downstream | 1076743 | 1212624 ~ 1213369 (+) |
G2335147 | NA | non-coding | downstream | 22272 | 102892 ~ 103231 (+) |
G2335150 | NA | non-coding | downstream | 26789 | 107409 ~ 107770 (+) |
G2335164 | NA | non-coding | downstream | 52139 | 132759 ~ 133049 (+) |