Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110513551 |
| gene name | LOC106594963 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NW_023493661.1 |
| NCBI id | JAAXML020000899.1 |
| chromosome length | 1874749 |
| location | 174502 ~ 230300 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| pre-mRNA-splicing factor 38B-like, partial |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036972117.1 | False | 7527 | mRNA | 0.55 | 21 | 174502 | 230300 |
| TU2672039 | False | 952 | TUCP | 0.44 | 5 | 175138 | 202039 |
| TU2672038 | True | 670 | TUCP | 0.58 | 1 | 228052 | 228721 |
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NW_023493661.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118947070 | cacng2 | coding | upstream | 38621 | 78093 ~ 135881 (+) |
| LOC118947066 | NA | coding | upstream | 150401 | 18600 ~ 24101 (+) |
| LOC118947073 | prkcb | coding | upstream | 160480 | 3168 ~ 14022 (+) |
| LOC110517481 | LOC106592132 | coding | downstream | 16224 | 246524 ~ 331205 (+) |
| LOC118947061 | dctn5 | coding | downstream | 116781 | 347081 ~ 355770 (+) |
| LOC110512628 | cacna1h | coding | downstream | 496064 | 726364 ~ 881560 (+) |
| ndufab1b | LOC100194699 | coding | downstream | 687979 | 918279 ~ 922732 (+) |
| LOC110515829 | nubp1 | coding | downstream | 1076166 | 1306466 ~ 1324492 (+) |
| G2335228 | NA | non-coding | upstream | 2998 | 171114 ~ 171504 (+) |
| G2335110 | NA | non-coding | upstream | 28720 | 145257 ~ 145782 (+) |
| G2335108 | NA | non-coding | upstream | 32699 | 134228 ~ 141803 (+) |
| G2335164 | NA | non-coding | upstream | 41453 | 132759 ~ 133049 (+) |
| G2335150 | NA | non-coding | upstream | 66732 | 107409 ~ 107770 (+) |
| G2335230 | NA | non-coding | downstream | 145 | 230445 ~ 231029 (+) |
| G2335233 | NA | non-coding | downstream | 10464 | 240764 ~ 241227 (+) |
| G2335279 | NA | non-coding | downstream | 18016 | 248316 ~ 248528 (+) |
| G2335281 | NA | non-coding | downstream | 19401 | 249701 ~ 250011 (+) |
| G2335288 | NA | non-coding | downstream | 34961 | 265261 ~ 265858 (+) |
| G2335554 | NA | other | downstream | 766478 | 996778 ~ 999193 (+) |
| G2335635 | cacng3 | other | downstream | 982324 | 1212624 ~ 1213369 (+) |
| LOC110518397 | clec16a | other | downstream | 1209966 | 1440203 ~ 1513308 (+) |
