G2335272 (LOC100194699)


Basic Information

Item Value
gene id G2335272
gene name LOC100194699
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493661.1
NCBI id JAAXML020000899.1
chromosome length 1874749
location 344148 ~ 347900 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2672092
GCCGTGGACACTCACTGGGCGTGTTAGTAGTTCCTGGTTCATTCTTATTCATACACGTCCTTCTTGTCAGCGATGTACTGGACGATATCCTGAGGAGACATCAGCTTCTCTGCCTCCACATCCGGGATCTCAAACCCAAACTCATCCTCCATGGCCATAATGATCTCTACCTGGTCCAAGCTGTCTAACCCCAGGTCCTTCAGGAAGTGGGACGACGTCGCCAGCTTCTCTGGGTTGATCTTGTCGTAGAGCTTGAGGACGTACATGACTCGTTCTTTAATGCTTTCAATGGTGAGGGGAGGCAGGTCTCCATACTGTCTACAGAACACTCCCACTGAGCTGGCGAtCCGTGTTTGTTCGATCCACCGGGTCCGCTGACTGCTGGCAATGAAGGACAACGGTCGGGGGTTGAATAGGACCGGGACAGCTGCGGTTCTCACTGCAATGTTACCCGACGAGAGTCTCACGGAAGAGCGGGGGAGCTGGCGGACACACTGCGCTAGGACACGGGACGCCATGGTTTTGAGGATCAATCCCAGGGTGCAAAGCAAAACACGCGTTTTGGAAGACAAATtggtttccactagatagcac

Function

NR:

description
LOW QUALITY PROTEIN: acyl carrier protein, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2672092 True 594 lncRNA 0.53 4 344148 347900
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110517481 LOC106592132 coding upstream 12943 246524 ~ 331205 (+)
LOC110513551 LOC106594963 coding upstream 113848 174502 ~ 230300 (+)
LOC118947074 NA coding upstream 135131 207706 ~ 209017 (+)
LOC118947070 cacng2 coding upstream 208267 78093 ~ 135881 (+)
LOC118947066 NA coding upstream 320047 18600 ~ 24101 (+)
LOC110512628 cacna1h coding downstream 378464 726364 ~ 881560 (+)
ndufab1b LOC100194699 coding downstream 570379 918279 ~ 922732 (+)
LOC110515829 nubp1 coding downstream 958566 1306466 ~ 1324492 (+)
LOC110511347 ciita coding downstream 1019609 1367509 ~ 1389930 (+)
LOC110518397 clec16a coding downstream 1092303 1440203 ~ 1513308 (+)
G2335307 NA non-coding upstream 729 343047 ~ 343419 (+)
G2335306 NA non-coding upstream 2960 340942 ~ 341188 (+)
G2335274 NA non-coding upstream 5311 337406 ~ 338837 (+)
G2335275 NA non-coding upstream 7246 334137 ~ 336902 (+)
G2335278 NA non-coding upstream 10567 333351 ~ 333581 (+)
G2335277 NA non-coding downstream 16397 364297 ~ 366431 (+)
G2335327 NA non-coding downstream 51542 399442 ~ 399931 (+)
G2335424 NA non-coding downstream 128425 476325 ~ 476535 (+)
G2335437 NA non-coding downstream 163749 511649 ~ 624613 (+)
G2335446 NA non-coding downstream 206161 554061 ~ 555067 (+)
G2335110 NA other upstream 198366 145257 ~ 145782 (+)
G2335108 NA other upstream 202345 134228 ~ 141803 (+)
G2335554 NA other downstream 648878 996778 ~ 999193 (+)
G2335635 cacng3 other downstream 864724 1212624 ~ 1213369 (+)
G2335708 NA other downstream 1173677 1521577 ~ 1524881 (+)

Expression

G2335272(LOC100194699) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 250.
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G2335272(LOC100194699) Expression in each Bioproject

Bar chart with 21 bars.
G2335272(LOC100194699) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 4000.
End of interactive chart.

Co-expression Network