XLOC_004222


Basic Information

Item Value
gene id XLOC_004222
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 32809971 ~ 32942872 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008821
GGCAAACTTTCTTTGTTAGTTTGCCATCAGCATTAAAtaccagaagaagaagaaaacattACAACCTGCTTTACAAGTCATATTAGATTAGAAATTagcatttgctttattttggtgACAATCAGCCACTGAGGTTTCACAAGCACCTCTTACGTCTGATGTGCCATCGATGTAATGATCGGACTTCGCGGCAAATGAATATACCTGACAGCGGACAATCTATGCGACATTATGTCACCAAAATGGGGACTTGAAGGAGGACCACAGGACTTAAGGAGGCGTTTGGGACGGAGCCCATATTTGCATTGGCCAGACATGACCTCATGATGACTGGTGAACTCCATCAAGGACAACATCTGATTCATATGCTGATGCTAATGGACCGATGTGGCCCTTTCCAGATCCTCTTCATTAAGTAAATGCACTTAGCGACTTATAATAAACAGCCTCGTCTGGATTGGACACCACAGATCTGAAATGATAATCAAAAACCTACCACTGGTGATGAAGTAATGGTTGCCAGGTTACGGCTTCTTGAAATGCACAGTCATAATTATTTGGAATAAATAACAAGAGGCCTATTGAAAATGGACTTGACGGAAGATTGGGATTCAGCTCATGGAAGAATGCAGAGGTAGCCATGCTCCGATacccgcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagacgcACACAGAGAGTCTATATCAGGATCCATTAATCATATCACCTCATTAAAACACAAGCGCAGGAAGGCTGgcaagtgtgtgagtgtgtattttaCATGTGACTGTTtgttaccagaaatttaaatcttaatttgtTTAGTGAAACAGCTTAATGTGTGTGAaatat
>TCONS_00008822
GGCAAACTTTCTTTGTTAGTTTGCCATCAGCATTAAAtaccagaagaagaagaaaacattACAACCTGCTTTACAAGTCATATTAGATTAGAAATTagcatttgctttattttggtgACAATCAGCCACTGAGGTTTCACAAGCACCTCTTACGTCTGATGTGCCATCGATGTAATGATCGGACTTCGCGGCAAATGAATATACCTGACAGCGGACAATCTATGCGACATTATGTCACCAAAATGGGGACTTGAAGGAGGACCACAGGACTTAAGGAGGCGTTTGGGACGGAGCCCATATTTGCATTGGCCAGACATGACCTCATGATGACTGGTGAACTCCATCAAGGACAACATCTGATTCATATGCTGATGCTAATGGACCGATGTGGCCCTTTCCAGATCCTCTTCATTAAGTAAATGCACTTAGCGACTTATAATAAACAGCCTCGTCTGGATTGGACACCACAGATCTGAAATGATAATCAAAAACCTACactcgaaccccatggtcgcagtcaactcctc
>TCONS_00008823
gacaaatttaattaattttcttttgttccCGTTGAGTGACACCATTCCTTTCTTTCCCTCCAGCGAGCTATCGGCAAATTATTCCACCACCTAATGTCCTTATTCATATCAGCACGGTGACCAAGGAAACTTTGTCATTGATATGAGAGCGGTTATTCAGAGTAGCGCTCGAGTATTCCGGCATTCAGAAAGCCTCCACTGAGACCAGGAGCAGGGGATCATGAAGGACGAAGCGGCCCAGGTAAAGTGACCTTTGCTGCAGTCGTGGAATGATCCAGGCGGCAGGAGCCTTCGGGAGATCTCTCCAGCATACTTATCTGCTATATTACTTTCTGGGCACCTCCTGGGATGGGCCTGCACTCCGAGAACTGTCTGGTTTCACAAGCACCTCTTACGTCTGATGTGCCATCGATGTAATGATCGGACTTCGCGGCAAATGAATATACCTGACAGCGGACAATCTATGCGACATTATGTCACCAAAATGGGGACTTGAAGGAGGACCACAGGACTTAAGGAGGCGTTTGGGACGGAGCCCATATTTGCATTGGCCAGACATGACCTCATGATGACTGGTAGGTTCCTATTGGCCCCAATGGTCCTAAATGAAGCGATTTATTGTTTCCATCCTTTCCGTAACAAAACAGGCATTAAGGAGTTTAAGCCCTAGTGATCTTTTTCTATCCAGGTTTAATTTGACCCCAATATAAAAATGGACTTTTAGGGtgtttccaaacctgtatgagtttatttttgtttataatgtttaagcagggtaacaagatcgaagtttaagacattagattccgAAATATGCACAGACACTTTTCtttatacaaaaaatgtattgactaatctaacagaaaccgacacctaacacaaacacacattcatacaggtTGTAGAGAAGAAGGAAACATTGGATTTAAGATCAAACTAAGCAAACCAAAAATAATCAGTTTAACCCTTCTATGGTCTCTTTAGggttgtatatacagttgaagtccgaattattagcccccagccccc
>TCONS_00008825
GAGTCGCCTAATCAAAGTCACCGAATTGTTGCTGtgacaaatttaattaattttcttttgttccCGTTGAGTGACACCATTCCTTTCTTTCCCTCCAGCGAGCTATCGGCAAATTATTCCACCACCTAATGTCCTTATTCATATCAGCACGGTGACCAAGGAAACTTTGTCATTGATATGAGAGCGGTTATTCAGAGTAGCGCTCGAGTATTCCGGCATTCAGAAAGCCTCCACTGAGACCAGGAGCAGGGGATCATGAAGGACGAAGCGGCCCAGGTAAAGTGACCTTTGCTGCAGTCGTGGAATGATCCAGGCGGCAGGAGCCTTCGGGAGATCTCTCCAGCATACTTATCTGCTATATTACTTTCTGGGCACCTCCTGGGATGGGCCTGCACTCCGAGAACTGTCTGGGGAAATCAGTGCCTCGGAGGATCACGACTGTGACCTCTGTTTAGACCAGGGGCCCCCAGAGGGTATTCACTACAGTCTGTGGGGGCGATTGAGCCCCAGCTGCTGCTGTCACAGTCGGGTCCACGGGGCAACTTGGCCCAGGAGCCAGAAGAGGGAACCAGTGGAAAGGACGGGAGCAGATGTGTGAAGCCCTGTGACCAATGTGTCACACTGGGTGACTGTGACACGACCTTGCTCCTGGCCCAGACACCAGTCGACTCTGCAGTAAATGCAAAAATGAAGGAGACAGtgagtgtgtcagtgtgtgtgcgtgctgctCAATTACAGTTCATATGGAGCATGATAACTGTGGAAACCAGGGAGTTGTTGTTAATTATGTGACTCGTTAATGCCTGTTTGTAATGGCTTCATTTCTCACAATACATTTCTCACCTTTACCTCCTTCTCACTTTGATCATAATCAGATGTGTCAGATAGTTCATAAATGTCTTGTTTCAGATATAGCGGCAGTAATGATCATTGCAGAAATAGATCTTTtgagtcgttttttttttttactcctttgGTCTCAGCCCGTTTCTGCTGTAATTAATGTCAGCTAGCTTGAGCGAGCATGCCCTGGTGTTCATCAAATGAGTTTTATGTGGCAGTGATTCATTTAAAGGTCGTCACTAAATTAGCATTACTCTATCCAAGTCATTACTAAGAATAGCTCACAGCAAACTTGCtgctctttgttttgtttttttgttttttttgtctctcctctgttttgtttgtttgttcatgaaAGTCTGTGATGGATGAAGGTTCTAATCACAGGAGGAGATGAAAAAGTACACAACCTTTTCGCTAGTGTTGATTTTGCTTTGCaacgcaaaaaaacaacaaatgtagaTGTGTGAAATATCACAGCGTACTGAAGGATGGCTTGGTTAAAATCTTGGCTGGTAttcaaaatagtagttaatagtaatATAGTAATTCAAAATAGTAGTTAATTAGCGAAAGTTAAATCAtgtgtggcgacgcagtggcgcagtagctgtcgcctcacagcaagaatgtcgctgggttgcaggttagagcctcggctgcttcagttggcatttctgtgtgaagtttgcatgttatccctgcgttcgcgtgggttacctccgAGTACTCCGGttttccacacagtccaaagacatgcggtacaggtgaattgggtaggctaaattgtccatagtgtatgagtgtgtgtgtggatgttttacagagatgggttgcggccggaagggcatccgctgcgtaaaaacgtgctggataagttggcgattcattccacggtggcaaccccggattaataaaggactaagctaaaaataaaataaaagtatgaaTAAATCACGTGTGAAAAAAGTGGTACGGGT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008821 False 894 lncRNA 0.42 4 32809971 32928671
TCONS_00008822 False 527 lncRNA 0.43 4 32825636 32928671
TCONS_00008823 False 1029 lncRNA 0.43 3 32927279 32942837
TCONS_00008825 True 1826 lncRNA 0.45 3 32932771 32942872

Neighbor

gene id symbol gene type direction distance location
XLOC_004221 BX000696.1 coding downstream 72378 32731165 ~ 32737593 (-)
XLOC_004220 pcdh17 coding downstream 86120 32576300 ~ 32723851 (-)
XLOC_004218 NA coding downstream 246249 32457316 ~ 32563722 (-)
XLOC_004219 NA coding downstream 336588 32472783 ~ 32473383 (-)
XLOC_004217 NA coding downstream 418583 32365912 ~ 32391388 (-)
XLOC_004224 NA coding upstream 34410 32977282 ~ 33064553 (-)
XLOC_004225 NA coding upstream 220308 33163180 ~ 33179795 (-)
XLOC_004226 BX530032.2 coding upstream 247786 33190658 ~ 33198604 (-)
XLOC_004227 NA coding upstream 362260 33305132 ~ 33401476 (-)
XLOC_004228 lims1 coding upstream 655341 33598213 ~ 33618612 (-)
XLOC_004063 CR854846.1 misc downstream 16682293 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 20118280 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 20188204 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 20218675 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 20296709 12512966 ~ 12513262 (-)
XLOC_004216 NA non-coding downstream 652445 32150218 ~ 32157526 (-)
XLOC_004229 NA non-coding upstream 733962 33676834 ~ 33688949 (-)

Expression


Co-expression Network