LOC110517699


Basic Information

Item Value
gene id LOC110517699
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493662.1
NCBI id JAAXML020000566.1
chromosome length 1797194
location 887107 ~ 1016244 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036972215.1
tgtacacacctctctctgtctgaagggaacagaaaggtgacCTGTACACGCCAAGTCCAACCATATCctgaccatccagacagattCACCAACTGGTGTCAGgttctgtgtagagagggtctgtctggacgctgttactgggaggtggagTGGACTGGTGGTGTTGTTACAGCAGTCTCATATAAAGACAtcagcagaacagagagagAATCAGGAAGTCCCTTCCCTTCCCACAAACTCTCTTCTGAGGAAACGAAACTGATCagagtctgtctgtgtgagagtgaaCAACCGTCCAAATGGCTCAGCAGGGAGTTCTGCTGGACCAGGAccagttctgttgttctgtctgtctggatctacTGAAGGAGCCGGTGGCTATTCCCTGTGGACACAGTTACTGTAGGAGCTGTATTCAGGGCTGCTGGGATCAGGATGTTCTGAAAGGGGTCTATAGCTGTCCTCAGTGCAGAGAGACCTTCACTCCAAGGCCTAATCTGAGGAAAAATAACATGTTGGCTGAGCTGGTGGAGAAACTGAGGAAGACAGGACTCCAGGCTGCTCCCCCTCCTGCTCTGTGCTAtgctggacctggagatgtggCGTGTGATTTCTGCACTGGgaccagaaagcagaaagccctcatgtcctgtctggtgtgtctggcctcttactgtgagactcacctcCAACCTCACTATGAATTTCCTGGTTTCAAGAAGCACAAGCTGGTCAAAGCCACGGCACAACTACAGGAGAAGATGTGCTCTCATCATGacaaactgctggaggtttaCTGTCGTACCGATCAGCAGTGTATCTGTCTGCTGTGTACAATGGATGAACATAAAGGCCATGATACAGTGTCAGCTGAGGCAGAGAGGACTGAGAAACAGaggcagctggggatgagtcagcagaaggtccagcacagattccaggagagagagaaggagctgaaggagctccaacaggctgtggagtctttcaagcgctctgcacagtcagcagtggaggacagtgatcagatctttactgagctgatccgctccattgagagaaggagctctgaggtgaaggagatgatcagagcccaagagaaggctcaagtgagtcaagctgaaggactcctggagcaactgaagcaggagatagctgagctgaggaagagaagcactgagctggagcagctctcacacacagaggatcacatCCATTTCCTCCAGaggtatcagtctctctccagtatcagtgtatcttcagacttacccagcatcgttgtccctcctcttcagtactttggagatgtgagtaagactgtgtctgaactgagagagaaactagaagacttccttaaaggagaatggaccaagatctccactacagtgaatatagtggatgttgtactgcctccagagcccaagaccagagaacagttgttacaatattcctgtcagctcacactggacccaaacacagcatacacatacctctctctgtctgaagggaacagaaaggtgacCTATACAGGCCAAGTCCAACCACATCCTGTCCATCCAGACAGATTCACCAACTGGTACCAGgttctgtgtagagagggtctgtctggacgctgttactgggaggtggagaggactgGTGGTGTTATTACAGCAGTCTCATATAAAGACATCAGCAGAACAGGGACAGATAGTGGATTTGGACTCAATAACAAGTCCTGGAGTTTACAGTGCTCTAGAGGTGGTTATTGTTTCAGACACAATAATGTTGAGACTAAAGTATCAGGCCCTCAGTcctccagagtaggagtgtacctggatcacaaggcaggtactctgtccttctacagtgtctctgacacaatgaccctcctccacagagtccagaccacattcactcagcccctctatcctGGGTTTTGTCTCAATGGTACTGCTGAGCtagttaaactgtagtagggtcaacatagatactagtcatgctggtgtagtctatagctgagctggttaaactgtagtagggtccacatagatactagtcatgctggtgtagtctatagctgagctggttaaactgtagtagggtccacatagatactagtcatgctggtgtagtctatagctgagctggttaaactgtagtagggtccacatagatactagtcatgctggtgtagtctatagctgagctggttaaactgtaaactgatttgttattaattaaaattcaatacaatgttttaatcttgtacatttccatgaatcatgatgtctggtgttgatgtatattggttgtcattcagaaccattgatatgttttctcagttggttctctgtctctatgtaattctcctcagtatcattgatcagcttgttggctcggtcctaattgatgtgttctctgtcacctggagctgcatgGAAAATGGTCCAGGAACTAAAGGACAATTCAGGACTAGTCAGCCCACTATAAGCTGGTATCACTTactttctactaaactatatggtctggtttcccagacacagatgaatcctagtcctggactaaacagtatgttcaatgtatatgtccaggaaaccggccctaaatgtgtcatctttcatcctcccatactgctcagtccagcaacattaaacctgtccagcaggtggtgccgttgaccaaacaataaaaccagcagatatcttgacttgccactcagtatatcagtaatgttcagaatagtactttaatatcattggagattgatggtctttttaatccactatccagagtcaggaacagatgaagttaggtctgctactgttcagtgattaaatatgatttatggtgatgggaaataataaaaaacactcaacttca

Function

NR:

description
fish virus induced TRIM protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036972215.1 True 2862 mRNA 0.46 7 887107 1016244
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110518413 NA coding downstream 10372 867772 ~ 876735 (-)
LOC118947075 LOC106561472 coding downstream 58742 801866 ~ 828365 (-)
LOC110510765 NA coding downstream 149482 725538 ~ 737625 (-)
LOC110512767 NA coding downstream 177365 696244 ~ 709742 (-)
LOC110518824 NA coding downstream 227593 654738 ~ 659514 (-)
LOC118947077 NA coding upstream 129031 1145275 ~ 1154666 (-)
LOC118947078 NA coding upstream 148887 1165131 ~ 1191572 (-)
LOC118947081 NA coding upstream 175157 1191401 ~ 1193634 (-)
LOC118936624 NA coding upstream 177387 1193631 ~ 1303540 (-)
LOC110515005 LOC106570977 coding upstream 314206 1330450 ~ 1346923 (-)
G2337223 NA non-coding downstream 7037 879033 ~ 880070 (-)
G2336852 NA non-coding downstream 20985 865102 ~ 866122 (-)
G2337221 NA non-coding downstream 27204 859548 ~ 859903 (-)
G2337220 NA non-coding downstream 28293 858328 ~ 858814 (-)
G2336989 NA non-coding downstream 37915 828981 ~ 849192 (-)
G2336871 LOC106561472 non-coding upstream 28462 1044706 ~ 1081957 (-)
G2336966 NA non-coding upstream 33433 1049677 ~ 1051014 (-)
G2336880 NA non-coding upstream 36637 1052881 ~ 1423517 (-)
G2336844 NA non-coding upstream 39250 1055494 ~ 1135132 (-)
G2337251 NA non-coding upstream 60353 1076597 ~ 1550343 (-)
G2336796 LOC106604345 other downstream 10448 654795 ~ 928702 (-)
G2337195 NA other downstream 138881 741519 ~ 748226 (-)
G2336862 LOC106594727 other downstream 241497 640303 ~ 645610 (-)
G2337157 LOC106569275 other downstream 334357 552165 ~ 552750 (-)
G2337140 NA other downstream 375213 503438 ~ 511894 (-)
G2337292 LOC106584805 other upstream 266573 1282817 ~ 1284774 (-)
G2336998 NA other upstream 498874 1515118 ~ 1516276 (-)
G2337349 NA other upstream 560932 1576712 ~ 1591372 (-)
G2337366 NA other upstream 629230 1645474 ~ 1645846 (-)
LOC100136000 fintrim other upstream 672013 1581271 ~ 1690474 (-)

Expression

LOC110517699 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 30.
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LOC110517699 Expression in each Bioproject

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LOC110517699 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1500.
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Co-expression Network