XLOC_004224


Basic Information

Item Value
gene id XLOC_004224
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 32977282 ~ 33064553 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008826
GGGAATTCTTACACCTGtcactatcacacacacacacacacgcatacactccGTCTGCCAGTGCTTCGCTTTGCTAGAGTGAGCGACACGGTGGATGGTCTGCCACTAATTGCTGCAGTTAAGACAGCGGAACTTACCTGTGCTGAAGAGCTACCTGGTCTAATGTGCTGTAAAATCATTATGCTGTTTGCCGAGATCTTTGTTCGATACTTTTCTTTTtaccttgtttttattttattttttgcttgagACAGGACTGTTGACACGGATGCCTGGCTTGCAGAGTGGCTCGGCTTTGCATAGTGTACATCACCCTTAATCAGCCCCTGGAGAGCATTCCCGAATATCGTTCCTGAGCACTCCTAGAGTGAGGAAGATACCTGTAAACACTTTCAAACTATTTGCAAGTTCCAGGGTTAGCTGTCACTTTGTATATtcggcagaaaaaaaaaagttcaggtATCTCAGGAGTCTGGTTAAAAGCTACCCAGCATTGCTTTCCTGCTGTCAGTCAAAGAAACATCGTTTTTTTCTTTCGCAAACACGGGACTTGGAAGGCAAATGCAGGAAGTGGCAATAACAAGCCTGAGCTGAGATGGAGTGTGAGTGAATCCTTTAGCTCATCCGCACATGTTTTCTCCTGCTCTTTGCTCCGCTACTACACCGTCCACAGCTCTGCTCCTCTGGCTTCCAGCCGGCCTGACCTCTCAGCAGTAATTCTACTCTTACATGTAGGCTGAATCGATTCCAGAGAGCCAGCACAGCTAATTCAAGATCCTCCAGAGGTCACTGTGGatgctttttgagatttcaaatttctcttgtgagtgccatttgcgcctgctgttcttgtgtaaatccaccagaggccactgtcaaatGACTGATCAATCGAC
>TCONS_00008476
TGTTATTGTTATTGATGTCTAAAACAATGGCAGAAGCGCATTGATGGAGTGGCAGATTATGAATGGGAAAGGAGCTGATGGGGTACAATGGAGACGAGAGGTGCAAGCCGATTATCGACGGCCTGACAGTGTTTTCCGTCACATTGACTGACAGAGTGACATTTGTGAAGATGGAGTGTGAGTGAATCCTTTAGCTCATCCGCACATGTTTTCTCCTGCTCTTTGCTCCGCTACTACACCGTCCACAGCTCTGCTCCTCTGGCTTCCAGCCGGCCTGACCTCTCAGCAGTAATTCTACTCTTACATGTAGGCTGAATCGATTCCAGAGAGCCAGCACAGCTAATTCAAGgtcattttcacattatttc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008826 False 896 lncRNA 0.46 3 32977282 33064553
TCONS_00008476 True 368 lncRNA 0.47 2 32977954 32982868

Neighbor

gene id symbol gene type direction distance location
XLOC_004222 NA coding downstream 34410 32809971 ~ 32942872 (-)
XLOC_004223 NA coding downstream 44655 32930519 ~ 32932627 (-)
XLOC_004221 BX000696.1 coding downstream 239689 32731165 ~ 32737593 (-)
XLOC_004220 pcdh17 coding downstream 253431 32576300 ~ 32723851 (-)
XLOC_004218 NA coding downstream 413560 32457316 ~ 32563722 (-)
XLOC_004225 NA coding upstream 98627 33163180 ~ 33179795 (-)
XLOC_004226 BX530032.2 coding upstream 126105 33190658 ~ 33198604 (-)
XLOC_004227 NA coding upstream 240579 33305132 ~ 33401476 (-)
XLOC_004228 lims1 coding upstream 533660 33598213 ~ 33618612 (-)
XLOC_004229 NA coding upstream 612281 33676834 ~ 33688949 (-)
XLOC_004063 CR854846.1 misc downstream 16849604 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 20285591 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 20355515 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 20385986 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 20464020 12512966 ~ 12513262 (-)
XLOC_004219 NA non-coding downstream 503899 32472783 ~ 32473383 (-)
XLOC_004234 CR925698.1 non-coding upstream 901605 33966158 ~ 33966272 (-)

Expression


Co-expression Network