G2336397 (LOC106587643)


Basic Information

Item Value
gene id G2336397
gene name LOC106587643
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493662.1
NCBI id JAAXML020000566.1
chromosome length 1797194
location 737769 ~ 823788 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2673975
agagagagggagggagagacagacaggacaacataatgattgagatgaatagttccacatgaagttaatttcatatcacatgtaacaagacagtttagttacctggaggaaatggatgtgatcctctgtgtgtgagagctgctccagctcagtgcttctcttcctcagctcagctatctcctgcttcagttgctccaggagtccttcagcttgactcacttgagccttctcttgggctctgatcagctccttcacctcagagctccttctctcaatggagcggatcagctcagtaaagatctgatcactgtcctccactgctgactgtgcagagcgctggagagagagagagacagagagagagagagagagacagagagagagacagagagagagagacagagagagagagacagagagagagagacagacagagagagacagacagacagacagagagagagagagagagagagagaaagacagagtgagacagtagGTTCAGTAGTCTCTCTACACCTCATTACCTCTCTACTGCTCTCCAGGTCCACCAGGCCttgtcctccctcctggacagacaggtacagaacacctcttggtcctgctcttctctcctccctcctggacagacaggtacagaacacctcttgatcctgctctactctcctccctcctggacagacaggtacagaacacctcttggtcctgctctactctcctccctcctggacagacaggtacagaacacctcttggtcctgctctactctcc

Function

NR:

description
tripartite motif-containing protein 47-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2673975 True 771 lncRNA 0.51 2 737769 823788
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110516269 NA coding upstream 54777 666560 ~ 682992 (+)
LOC110519397 NA coding upstream 95615 640728 ~ 642816 (+)
LOC118947079 NA coding upstream 164355 516802 ~ 573414 (+)
LOC118947097 NA coding upstream 207570 527708 ~ 530199 (+)
LOC110511244 NA coding upstream 275694 454447 ~ 462075 (+)
LOC110517712 LOC106574369 coding downstream 15751 839539 ~ 866848 (+)
LOC110499824 NA coding downstream 130989 954777 ~ 960598 (+)
LOC118947076 NA coding downstream 213569 1037357 ~ 1037794 (+)
LOC118947086 NA coding downstream 229541 1053329 ~ 1054233 (+)
LOC118947088 LOC106593566 coding downstream 257301 1081089 ~ 1098264 (+)
G2336301 NA non-coding upstream 6171 706692 ~ 731598 (+)
G2336619 NA non-coding upstream 26752 710077 ~ 711017 (+)
G2336611 NA non-coding upstream 32785 685106 ~ 704984 (+)
G2336330 NA non-coding upstream 40888 666047 ~ 696881 (+)
G2336612 NA non-coding upstream 42600 694424 ~ 695169 (+)
G2336364 LOC106591196 non-coding downstream 3800 827588 ~ 876770 (+)
G2336263 LOC106561577 non-coding downstream 18854 842642 ~ 844023 (+)
G2336369 NA non-coding downstream 27725 851513 ~ 856249 (+)
G2336643 NA non-coding downstream 29829 853617 ~ 858157 (+)
G2336645 NA non-coding downstream 35242 859030 ~ 859552 (+)
G2336431 NA other downstream 532115 1355903 ~ 1389866 (+)
G2336736 NA other downstream 663676 1487464 ~ 1488419 (+)
G2336367 NA other downstream 754452 1578240 ~ 1581200 (+)
LOC110515277 NA other downstream 933915 1741320 ~ 1761572 (+)

Expression

G2336397(LOC106587643) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 20.
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G2336397(LOC106587643) Expression in each Bioproject

Bar chart with 18 bars.
G2336397(LOC106587643) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
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Co-expression Network