Gene
RNA
| Item | Value |
|---|---|
| gene id | G2336963 |
| gene name | LOC106587643 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NW_023493662.1 |
| NCBI id | JAAXML020000566.1 |
| chromosome length | 1797194 |
| location | 766103 ~ 798289 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| tripartite motif-containing protein 47-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2674678 | True | 558 | lncRNA | 0.44 | 2 | 766103 | 798289 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110510765 | NA | coding | downstream | 28478 | 725538 ~ 737625 (-) |
| LOC110512767 | NA | coding | downstream | 56361 | 696244 ~ 709742 (-) |
| LOC110518824 | NA | coding | downstream | 106589 | 654738 ~ 659514 (-) |
| LOC118947101 | NA | coding | downstream | 114900 | 649835 ~ 651203 (-) |
| LOC110511243 | LOC106587646 | coding | downstream | 132458 | 617168 ~ 633645 (-) |
| LOC118947075 | LOC106561472 | coding | upstream | 3577 | 801866 ~ 828365 (-) |
| LOC110518413 | NA | coding | upstream | 69483 | 867772 ~ 876735 (-) |
| LOC110517699 | NA | coding | upstream | 88818 | 887107 ~ 1016244 (-) |
| LOC110503179 | NA | coding | upstream | 128564 | 926853 ~ 933504 (-) |
| LOC118947091 | NA | coding | upstream | 178576 | 976865 ~ 990292 (-) |
| G2337197 | NA | non-coding | downstream | 13472 | 751638 ~ 752631 (-) |
| G2337196 | NA | non-coding | downstream | 15507 | 743823 ~ 750596 (-) |
| G2337194 | NA | non-coding | downstream | 18744 | 741003 ~ 747359 (-) |
| G2336881 | NA | non-coding | downstream | 35913 | 626759 ~ 730190 (-) |
| G2337190 | NA | non-coding | downstream | 44121 | 721208 ~ 721982 (-) |
| G2336834 | NA | non-coding | upstream | 21113 | 819402 ~ 819884 (-) |
| G2337014 | NA | non-coding | upstream | 26234 | 824523 ~ 843109 (-) |
| G2336989 | NA | non-coding | upstream | 30692 | 828981 ~ 849192 (-) |
| G2336846 | NA | non-coding | upstream | 35630 | 833919 ~ 945842 (-) |
| G2337211 | NA | non-coding | upstream | 39751 | 838040 ~ 838866 (-) |
| G2337195 | NA | other | downstream | 17877 | 741519 ~ 748226 (-) |
| G2336862 | LOC106594727 | other | downstream | 120493 | 640303 ~ 645610 (-) |
| G2337157 | LOC106569275 | other | downstream | 213353 | 552165 ~ 552750 (-) |
| G2337140 | NA | other | downstream | 254209 | 503438 ~ 511894 (-) |
| G2337117 | NA | other | downstream | 342837 | 418582 ~ 423266 (-) |
| G2336796 | LOC106604345 | other | upstream | 77231 | 654795 ~ 928702 (-) |
| G2337292 | LOC106584805 | other | upstream | 484528 | 1282817 ~ 1284774 (-) |
| G2336998 | NA | other | upstream | 716829 | 1515118 ~ 1516276 (-) |
| G2337349 | NA | other | upstream | 778887 | 1576712 ~ 1591372 (-) |
| G2337366 | NA | other | upstream | 847185 | 1645474 ~ 1645846 (-) |
