LOC110516851 (LOC103393300)


Basic Information

Item Value
gene id LOC110516851
gene name LOC103393300
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493663.1
NCBI id JAAXML020000320.1
chromosome length 1654043
location 303920 ~ 354574 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036972260.1
GtcttctagtattctaattctatggtcCAGAGCCACCGAAAATGTCCGTCTGTGTTGCGGCTCGATCGGGACGGGGGATTTCGCCAGGAAATAATACACATTTAACCCCTGAAGAAGACAGACACAAGCCACATATTCTGACAACCTAGAGTACTATCCCCCAGGAAGGAGTGTCGAGTTGGTGTGTTGGAGCGACACCAACAAAAAAACGGGAGTTTACAGTAACAGTTCTTCCGCTGTGATGTCGGGTCCTGGGTCTCGGAGGACCGGGTCCAGCATCAAAATCCGCCTGACAGTCTTATGTGCCAAGAACCTTGCAAAGAAAGACTTCTTCCggttgccAGACCCATTTGCAAAGGTAGTGGTGGATGGATCAGGACAGTGTCATTCTACAGACACAGTGAAGAGCACTCTGGACCCCAAATGGAACCAACACTATGACCTgtACATAGGGAAGACAGACTCCATCACCATCAGTGTGTGGAACCATAAGAAGATCCACAAGCGGCAGGGCGCCGGGTTCCTGGGCTGTATACGACTGCTGGCTAACTCCATCAGCAGACTGAAAGACACTggctaccagcGGTTGGATCTGTGTAAGCTGAATCCATCAGACAGTGATGCAGTACGGGGACAGATCGTAGTGAGCCTCCAGACCAGAGATGGTTTGGGCAGCGGAGGACCCGTGGTCGACTGTAGAGGACTGTTAGAGAATGACGGgcctgtgTTTGAGAACTGTTTCAGTGAGGAGCCGCTACCGTACTCAGACCCCACGGGCGCCGCTGGGGGCGGGACCTGTCCACCGGATTCACCCAACCAGGAGAACCGGCTCCAGGCTCAGCGAATCAGAGGCCAGGATTCCCAAAGACACACCCACACCCCTCAGAACCGACCGCATGGCAACCAATCACCTGATCTGCCTGAGGGATACgagcagCGCACCACGGTGCAGGGCCAGGTGTATTTTCTTCACACACAGACGGGAGTCAGCACCTGGCATGACCCACGCATACCCAGGGACCTGGCCAGTGTGAGCTGTGAGGAGTTGGGTCCGCTGCCGGCCGGTTGGGAGGTGAGGAGCACGGTGTCGGGACGGATCTACTTTGTGGATCACAACAACCGAACAACGCAGTTCACTGACCCCCGGCTACACACCATCATCAGCCAACACTCCCAGGTGAAGGACTCGTCTCAGCCGCTGGGTGGGGGAggcgggagagagatggaggtggggggggaggagggaggagaaggggaggtgaCACTGCGTTatgagagagacctggtccacAAACTGAAGCTGCTCCGACACGAGCTGTCACTACAGCAACCACAGGCCGGACACTGTCGCATAGAGGTCTCACGAGACGAGATCTTTGAGgagtctTATCGTCAGATCATGAAGATGAGACCCAAGGATCTGAAGAAACGACTGATGGTGAAGTTTAGAGGAGAGGAAGGACTGGACTACGGAGGAGTGGCAAGGGAGTGGCTGTACCTGCTGTGCCATGAGATGTTGAACCCGTACTACGGCCTGTTCCAGTACTCAACAGACAACATTTACACTCTACAGATCAACCCTGACTCCTCTATAAACCCTGACCACCTGTCGTATTTCCACTTTGTGGGTCGTGTGATGGGCCTGGCAGTGTTCCATAGTCACTATATCAACGGAGGCTTCACCCTGCCCTTCTACAAGCAGCTGCTGGGGAAACCTATTATGCTACAAGACCTGGAGACCACTGATCCTGAACTTCACAAGAGTCTGGTCTGGATACTggagaaTGACATCTCGTCGGTTCTAGATCATACGTTCTGCGTGGaacacagtgccttcgggaagttcCTTCAACATGAGCTGAAACCCAACGGTCAGAACCTTCCGGTAACCGAGGACAACAAGAAGGAGTACGTGAAGCTTTATGTCACCTGGAGGTTTATGAGGGGGATCGAGGCTCAGTTCTTAGCTCTGCAGAAAGGATTCAGCCAACTGATTCCTCAACACCTCCTCAAACCATTTGACCACAAGGAGCTGGAGtTGATAATCGGAGGCCTGGGGAAGATAGACCTAGCAGATTGGAAGTCTAACACCCGTTTGAAGCACTGTGCTGTAGACAGTAATGTGGTTTGCTGGTTCTGGGAGGCTGTAGAGAGCttcactgaggagaggagaggacgactACTGCAGTTTGTTACCGGTTCTACCAGAGTTCCACTACAGGGATTCAAGGCACTACAGGgttcTACAGGTTCAGCAGGCCCAAGGCTGTTCACCATCCATCTGATAGAGGCCAACACAGACAACCTACCCAAGGCACACACatgTTTTAACAGAATAGATATCCCTCCCTACGAGTCGTACGAGAAACTTTATGAGAAACTGCTGACGGCCGTGGAGGAAACTTGCGGCTTCGCTGTggagtgaaacacacacacacacacgtcaccctGCAATAACCCCCCGCCCCTACAGAACTACTATTGACCAATCACAGGACAATACCACCTAGCCTCTCCCATCCCGACCAGACTGATCTCCAGGGGAACTGTCATCATGGGTCACGGCCGGGTTTGTTACCATGGGTGCATGATCCGGGGATATCATCGGTTCTTGTATTTTAGAGGTTTTTCAGATTTTGAAGAAACATTTTTATCCTTCAGTTTTATCGAGCTATGATGTCACTCTTCAGAACAACCAATGACTTTGATTCTGTCTCCAATCACACGCAGTCTCTGTACAGAATAAGCCaatcagagaccatctgagctgAAATCCTCCAATCAGAAAGCAGATTGATTAATGTTCATGCTTCATGTTTAaccactgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatagcacCTGGTCCTCTGTATAATGGTATTAAGCCTGTATGTCTCTctgattattattttatttatttactgtgatgatgatgatactgaCCTGCTGCTACTCTACAGAGACGGaccccctaacccctcctctcatccctccttcttttgtcttcctctctcctcatccccctcctctcatctctccacttctcctccctctcctctcatctttccttctctcctctcatccctcctctcatccctctctcc
>XM_036972261.1
GtcttctagtattctaattctatggtcCAGAGCCACCGAAAATGTCCGTCTGTGTTGCGGCTCGATCGGGACGGGGGATTTCGCCAGGAAATAATACACATTTAACCCCTGAAGAAGACAGACACAAGCCACATATTCTGACAACCTAGAGTACTATCCCCCAGGAAGGAGTGTCGAGTTGGTGTGTTGGAGCGACACCAACAAAAAAACGGGAGTTTACAGTAACAGTTCTTCCGCTGTGATGTCGGGTCCTGGGTCTCGGAGGACCGGGTCCAGCATCAAAATCCGCCTGACAGTCTTATGTGCCAAGAACCTTGCAAAGAAAGACTTCTTCCggttgccAGACCCATTTGCAAAGGTAGTGGTGGATGGATCAGGACAGTGTCATTCTACAGACACAGTGAAGAGCACTCTGGACCCCAAATGGAACCAACACTATGACCTgtACATAGGGAAGACAGACTCCATCACCATCAGTGTGTGGAACCATAAGAAGATCCACAAGCGGCAGGGCGCCGGGTTCCTGGGCTGTATACGACTGCTGGCTAACTCCATCAGCAGACTGAAAGACACTggctaccagcGGTTGGATCTGTGTAAGCTGAATCCATCAGACAGTGATGCAGTACGGGGACAGATCGTAGTGAGCCTCCAGACCAGAGATGGTTTGGGCAGCGGAGGACCCGTGGTCGACTGTAGAGGACTGTTAGAGAATGACGGgcctgtgTTTGAGAACTGTTTCAGTGAGGAGCCGCTACCGTACTCAGACCCCACGGGCGCCGCTGGGGGCGGGACCTGTCCACCGGATTCACCCAACCAGGAGAACCGGCTCCAGGCTCAGCGAATCAGAGGCCAGGATTCCCAAAGACACACCCACACCCCTCAGAACCGACCGCATGGCAACCAATCACCTGATCTGCCTGAGGGATACgagcagCGCACCACGGTGCAGGGCCAGGTGTATTTTCTTCACACACAGACGGGAGTCAGCACCTGGCATGACCCACGCATACCCAGGGACCTGGCCAGTGTGAGCTGTGAGGAGTTGGGTCCGCTGCCGGCCGGTTGGGAGGTGAGGAGCACGGTGTCGGGACGGATCTACTTTGTGGATCACAACAACCGAACAACGCAGTTCACTGACCCCCGGCTACACACCATCATCAGCCAACACTCCCAGGTGAAGGACTCGTCTCAGCCGCTGGGTGGGGGAggcgggagagagatggaggtggggggggaggagggaggagaaggggaggtgaCACTGCGTTatgagagagacctggtccacAAACTGAAGCTGCTCCGACACGAGCTGTCACTACAGCAACCACAGGCCGGACACTGTCGCATAGAGGTCTCACGAGACGAGATCTTTGAGgagtctTATCGTCAGATCATGAAGATGAGACCCAAGGATCTGAAGAAACGACTGATGGTGAAGTTTAGAGGAGAGGAAGGACTGGACTACGGAGGAGTGGCAAGGGAGTGGCTGTACCTGCTGTGCCATGAGATGTTGAACCCGTACTACGGCCTGTTCCAGTACTCAACAGACAACATTTACACTCTACAGATCAACCCTGACTCCTCTATAAACCCTGACCACCTGTCGTATTTCCACTTTGTGGGTCGTGTGATGGGCCTGGCAGTGTTCCATAGTCACTATATCAACGGAGGCTTCACCCTGCCCTTCTACAAGCAGCTGCTGGGGAAACCTATTATGCTACAAGACCTGGAGACCACTGATCCTGAACTTCACAAGAGTCTGGTCTGGATACTggagaaTGACATCTCGTCGGTTCTAGATCATACGTTCTGCGTGGaacacagtgccttcgggaagttcCTTCAACATGAGCTGAAACCCAACGGTCAGAACCTTCCGGTAACCGAGGACAACAAGAAGGAGTACGTGAAGCTTTATGTCACCTGGAGGTTTATGAGGGGGATCGAGGCTCAGTTCTTAGCTCTGCAGAAAGGATTCAGCCAACTGATTCCTCAACACCTCCTCAAACCATTTGACCACAAGGAGCTGGAGtTGATAATCGGAGGCCTGGGGAAGATAGACCTAGCAGATTGGAAGTCTAACACCCGTTTGAAGCACTGTGCTGTAGACAGTAATGTGGTTTGCTGGTTCTGGGAGGCTGTAGAGAGCttcactgaggagaggagaggacgactACTGCAGTTTGTTACCGGTTCTACCAGAGTTCCACTACAGGGATTCAAGGCACTACAGGGTTCAGCAGGCCCAAGGCTGTTCACCATCCATCTGATAGAGGCCAACACAGACAACCTACCCAAGGCACACACatgTTTTAACAGAATAGATATCCCTCCCTACGAGTCGTACGAGAAACTTTATGAGAAACTGCTGACGGCCGTGGAGGAAACTTGCGGCTTCGCTGTggagtgaaacacacacacacacacgtcaccctGCAATAACCCCCCGCCCCTACAGAACTACTATTGACCAATCACAGGACAATACCACCTAGCCTCTCCCATCCCGACCAGACTGATCTCCAGGGGAACTGTCATCATGGGTCACGGCCGGGTTTGTTACCATGGGTGCATGATCCGGGGATATCATCGGTTCTTGTATTTTAGAGGTTTTTCAGATTTTGAAGAAACATTTTTATCCTTCAGTTTTATCGAGCTATGATGTCACTCTTCAGAACAACCAATGACTTTGATTCTGTCTCCAATCACACGCAGTCTCTGTACAGAATAAGCCaatcagagaccatctgagctgAAATCCTCCAATCAGAAAGCAGATTGATTAATGTTCATGCTTCATGTTTAaccactgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatagcacCTGGTCCTCTGTATAATGGTATTAAGCCTGTATGTCTCTctgattattattttatttatttactgtgatgatgatgatactgaCCTGCTGCTACTCTACAGAGACGGaccccctaacccctcctctcatccctccttcttttgtcttcctctctcctcatccccctcctctcatctctccacttctcctccctctcctctcatctttccttctctcctctcatccctcctctcatccctctctcc
>TU2675311
GCCACCGAAAATGTCCGTCTGTGTTGCGGCTCGATCGGGACGGGGGATTTCGCCAGGAAATAATACACATTTAACCCCTGAAGAAGACAGACACAAGCCACATATTCTGACAACCTAGAGTACTATCCCCCAGGAAGGAGTGTCGAGTTGGTGTGTTGGAGCGACACCAACAAAAAAACGGGAGTTTACAGTAACAGTTCTTCCGCTGTGATGTCGGGTCCTGGGTCTCGGAGGACCGGGTCCAGCATCAAAATCCGCCTGACAGTCTTATGTGCCAAGAACCTTGCAAAGAAAGACTTCTTCCggttgccAGACCCATTTGCAAAGGTAGTGGTGGATGGATCAGGACAGTGTCATTCTACAGACACAGTGAAGAGCACTCTGGACCCCAAATGGAACCAACACTATGACCTgtACATAGGGAAGACAGACTCCATCACCATCAGTGTGTGGAACCATAAGAAGATCCACAAGCGGCAGGGCGCCGGGTTCCTGGGCTGTATACGACTGCTGGCTAACTCCATCAGCAGACTGAAAGACACTggctaccagcGGTTGGATCTGTGTAAGCTGAATCCATCAGACAGTGATGCAGTACGGGGACAGATCGTAGTGAGCCTCCAGACCAGAGATGGTTTGGGCAGCGGAGGACCCGTGGTCGACTGTAGAGGACTGTTAGAGAATGACGGgcctgtgTTTGAGAACTGTTTCAGTGAGGAGCCGCTACCGTACTCAGACCCCACGGGCGCCGCTGGGGGCGGGACCTGTCCACCGGATTCACCCAACCAGGAGAACCGGCTCCAGGCTCAGCGAATCAGAGGCCAGGATTCCCAAAGACACACCCACACCCCTCAGAACCGACCGCATGGCAACCAATCACCTGATCTGCCTGAGGGATACgagcagCGCACCACGGTGCAGGGCCAGGTGTATTTTCTTCACACACAGACGGGAGTCAGCACCTGGCATGACCCACGCATACCCAGGGACCTGGCCAGTGTGAGCTGTGAGGAGTTGGGTCCGCTGCCGGCCGGTTGGGAGGTGAGGAGCACGGTGTCGGGACGGATCTACTTTGTGGATCACAACAACCGAACAACGCAGTTCACTGACCCCCGGCTACACACCATCATCAGCCAACACTCCCAGGTGAAGGACTCGTCTCAGCCGC

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase SMURF1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036972260.1 False 3139 mRNA 0.52 17 303920 354574
XM_036972261.1 False 3130 mRNA 0.52 17 303920 354574
TU2675311 True 1168 TUCP 0.56 10 303951 333555

Neighbor

gene id symbol gene type direction distance location
LOC110513171 LOC106592102 coding upstream 18367 244305 ~ 285553 (+)
LOC110513632 LOC106593935 coding upstream 102228 165852 ~ 201735 (+)
LOC118947110 chst12 coding upstream 271177 16176 ~ 32743 (+)
LOC118947111 LOC106592188 coding downstream 2766 357340 ~ 365295 (+)
LOC110517035 LOC106593794 coding downstream 19072 373646 ~ 404607 (+)
LOC110514366 drg2 coding downstream 85095 439669 ~ 468142 (+)
LOC110518409 LOC103147439 coding downstream 188015 542589 ~ 642829 (+)
LOC118947105 NA coding downstream 288301 642875 ~ 712223 (+)
G2337479 NA non-coding upstream 14815 288884 ~ 289105 (+)
G2337478 NA non-coding upstream 15394 288287 ~ 288526 (+)
G2337474 NA non-coding upstream 42793 257558 ~ 261127 (+)
G2337475 NA non-coding upstream 44296 258776 ~ 259624 (+)
G2337458 NA non-coding upstream 66861 236276 ~ 237059 (+)
G2337512 NA non-coding downstream 23292 377866 ~ 378315 (+)
G2337518 NA non-coding downstream 54780 409354 ~ 409668 (+)
G2337519 NA non-coding downstream 55635 410209 ~ 410903 (+)
G2337520 NA non-coding downstream 62516 417090 ~ 417299 (+)
G2337538 NA other downstream 197093 551667 ~ 553181 (+)
LOC110516979 llgl1 other downstream 416708 771209 ~ 871700 (+)
LOC110512918 LOC106602080 other downstream 629861 984288 ~ 1012248 (+)
G2338043 NA other downstream 686386 1040960 ~ 1041498 (+)
G2337497 NA non-coding downstream 3039 336594 ~ 337087 (+)
G2337502 NA non-coding downstream 15688 349243 ~ 349756 (+)
G2337503 NA non-coding downstream 16427 349982 ~ 350447 (+)

Expression


Co-expression Network